Literature DB >> 26464513

Structure and assembly of the mouse ASC inflammasome by combined NMR spectroscopy and cryo-electron microscopy.

Lorenzo Sborgi1, Francesco Ravotti2, Venkata P Dandey3, Mathias S Dick1, Adam Mazur4, Sina Reckel1, Mohamed Chami3, Sebastian Scherer3, Matthias Huber2, Anja Böckmann5, Edward H Egelman6, Henning Stahlberg3, Petr Broz7, Beat H Meier8, Sebastian Hiller7.   

Abstract

Inflammasomes are multiprotein complexes that control the innate immune response by activating caspase-1, thus promoting the secretion of cytokines in response to invading pathogens and endogenous triggers. Assembly of inflammasomes is induced by activation of a receptor protein. Many inflammasome receptors require the adapter protein ASC [apoptosis-associated speck-like protein containing a caspase-recruitment domain (CARD)], which consists of two domains, the N-terminal pyrin domain (PYD) and the C-terminal CARD. Upon activation, ASC forms large oligomeric filaments, which facilitate procaspase-1 recruitment. Here, we characterize the structure and filament formation of mouse ASC in vitro at atomic resolution. Information from cryo-electron microscopy and solid-state NMR spectroscopy is combined in a single structure calculation to obtain the atomic-resolution structure of the ASC filament. Perturbations of NMR resonances upon filament formation monitor the specific binding interfaces of ASC-PYD association. Importantly, NMR experiments show the rigidity of the PYD forming the core of the filament as well as the high mobility of the CARD relative to this core. The findings are validated by structure-based mutagenesis experiments in cultured macrophages. The 3D structure of the mouse ASC-PYD filament is highly similar to the recently determined human ASC-PYD filament, suggesting evolutionary conservation of ASC-dependent inflammasome mechanisms.

Entities:  

Keywords:  ASC speck; inflammation; innate immune response; protein filament; protein structure

Mesh:

Substances:

Year:  2015        PMID: 26464513      PMCID: PMC4629351          DOI: 10.1073/pnas.1507579112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  42 in total

1.  Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA.

Authors:  Torsten Herrmann; Peter Güntert; Kurt Wüthrich
Journal:  J Mol Biol       Date:  2002-05-24       Impact factor: 5.469

2.  The Xplor-NIH NMR molecular structure determination package.

Authors:  Charles D Schwieters; John J Kuszewski; Nico Tjandra; G Marius Clore
Journal:  J Magn Reson       Date:  2003-01       Impact factor: 2.229

Review 3.  Mechanisms and functions of inflammasomes.

Authors:  Mohamed Lamkanfi; Vishva M Dixit
Journal:  Cell       Date:  2014-05-22       Impact factor: 41.582

4.  Extensive de novo solid-state NMR assignments of the 33 kDa C-terminal domain of the Ure2 prion.

Authors:  Birgit Habenstein; Christian Wasmer; Luc Bousset; Yannick Sourigues; Anne Schütz; Antoine Loquet; Beat H Meier; Ronald Melki; Anja Böckmann
Journal:  J Biomol NMR       Date:  2011-07-31       Impact factor: 2.835

5.  Structural architecture of the CARMA1/Bcl10/MALT1 signalosome: nucleation-induced filamentous assembly.

Authors:  Qi Qiao; Chenghua Yang; Chao Zheng; Lorena Fontán; Liron David; Xiong Yu; Clay Bracken; Monica Rosen; Ari Melnick; Edward H Egelman; Hao Wu
Journal:  Mol Cell       Date:  2013-09-26       Impact factor: 17.970

Review 6.  Structural mechanisms of inflammasome assembly.

Authors:  Alvin Lu; Hao Wu
Journal:  FEBS J       Date:  2014-11-21       Impact factor: 5.542

7.  Role of charged and hydrophobic residues in the oligomerization of the PYRIN domain of ASC.

Authors:  Mie Moriya; Shunichiro Taniguchi; Peter Wu; Edvards Liepinsh; Gottfried Otting; Junji Sagara
Journal:  Biochemistry       Date:  2005-01-18       Impact factor: 3.162

8.  High-resolution structure of the Shigella type-III secretion needle by solid-state NMR and cryo-electron microscopy.

Authors:  Jean-Philippe Demers; Birgit Habenstein; Antoine Loquet; Suresh Kumar Vasa; Karin Giller; Stefan Becker; David Baker; Adam Lange; Nikolaos G Sgourakis
Journal:  Nat Commun       Date:  2014-09-29       Impact factor: 14.919

9.  Kinetic traps in the folding/unfolding of procaspase-1 CARD domain.

Authors:  Yun-Ru Chen; A Clay Clark
Journal:  Protein Sci       Date:  2004-08       Impact factor: 6.725

10.  Molecular structure of β-amyloid fibrils in Alzheimer's disease brain tissue.

Authors:  Jun-Xia Lu; Wei Qiang; Wai-Ming Yau; Charles D Schwieters; Stephen C Meredith; Robert Tycko
Journal:  Cell       Date:  2013-09-12       Impact factor: 41.582

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  53 in total

1.  ASC Pyrin Domain Self-associates and Binds NLRP3 Protein Using Equivalent Binding Interfaces.

Authors:  Javier Oroz; Susana Barrera-Vilarmau; Carlos Alfonso; Germán Rivas; Eva de Alba
Journal:  J Biol Chem       Date:  2016-07-18       Impact factor: 5.157

2.  Functional and structural characterization of zebrafish ASC.

Authors:  Yajuan Li; Yi Huang; Xiaocong Cao; Xueying Yin; Xiangyu Jin; Sheng Liu; Jiansheng Jiang; Wei Jiang; Tsan Sam Xiao; Rongbin Zhou; Gang Cai; Bing Hu; Tengchuan Jin
Journal:  FEBS J       Date:  2018-06-14       Impact factor: 5.542

Review 3.  Structural biology of supramolecular assemblies by magic-angle spinning NMR spectroscopy.

Authors:  Caitlin M Quinn; Tatyana Polenova
Journal:  Q Rev Biophys       Date:  2017-01       Impact factor: 5.318

Review 4.  Assembly and regulation of ASC specks.

Authors:  Florian Hoss; Juan F Rodriguez-Alcazar; Eicke Latz
Journal:  Cell Mol Life Sci       Date:  2016-10-19       Impact factor: 9.261

5.  The inflammasome adapter ASC assembles into filaments with integral participation of its two Death Domains, PYD and CARD.

Authors:  Reinard Jeffrey T Nambayan; Suzanne I Sandin; David A Quint; David M Satyadi; Eva de Alba
Journal:  J Biol Chem       Date:  2018-11-20       Impact factor: 5.157

Review 6.  Inflammasomes: a novel therapeutic target in pulmonary hypertension?

Authors:  Tara Elizabeth Scott; Barbara K Kemp-Harper; Adrian J Hobbs
Journal:  Br J Pharmacol       Date:  2018-06-27       Impact factor: 8.739

Review 7.  Immunobiology and structural biology of AIM2 inflammasome.

Authors:  Bing Wang; Madhurima Bhattacharya; Sayantan Roy; Yuan Tian; Qian Yin
Journal:  Mol Aspects Med       Date:  2020-07-10

Review 8.  Inflammasomes: mechanism of assembly, regulation and signalling.

Authors:  Petr Broz; Vishva M Dixit
Journal:  Nat Rev Immunol       Date:  2016-06-13       Impact factor: 53.106

Review 9.  Ubiquitin-Modifying Enzymes and Regulation of the Inflammasome.

Authors:  Michael G Kattah; Barbara A Malynn; Averil Ma
Journal:  J Mol Biol       Date:  2017-10-13       Impact factor: 5.469

Review 10.  Comprehensive review of ASC structure and function in immune homeostasis and disease.

Authors:  Ishan Agrawal; Sushmita Jha
Journal:  Mol Biol Rep       Date:  2020-03-02       Impact factor: 2.316

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