Literature DB >> 22562365

Properties of the DREAM scheme and its optimization for application to proteins.

Thomas Westfeld1, René Verel, Matthias Ernst, Anja Böckmann, Beat H Meier.   

Abstract

The DREAM scheme is an efficient adiabatic homonuclear polarization-transfer method suitable for multi-dimensional experiments in biomolecular solid-state NMR. The bandwidth and dynamics of the polarization transfer in the DREAM experiment depend on a number of experimental and spin-system parameters. In order to obtain optimal results, the dependence of the cross-peak intensity on these parameters needs to be understood and carefully controlled. We introduce a simplified model to semi-quantitatively describe the polarization-transfer patterns for the relevant spin systems. Numerical simulations for all natural amino acids (except tryptophane) show the dependence of the cross-peak intensities as a function of the radio-frequency-carrier position. This dependency can be used as a guide to select the desired conditions in protein spectroscopy. Practical guidelines are given on how to set up a DREAM experiment for optimized Cα/Cβ transfer, which is important in sequential assignment experiments.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22562365     DOI: 10.1007/s10858-012-9627-4

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  13 in total

1.  Adiabatic dipolar recoupling in solid-state NMR: the DREAM scheme.

Authors:  R Verel; M Ernst; B H Meier
Journal:  J Magn Reson       Date:  2001-05       Impact factor: 2.229

2.  Polarization-transfer methods in solid-state magic-angle-spinning NMR: adiabatic CN pulse sequences.

Authors:  René Verel; Beat H Meier
Journal:  Chemphyschem       Date:  2004-06-21       Impact factor: 3.102

3.  The molecular organization of the fungal prion HET-s in its amyloid form.

Authors:  Christian Wasmer; Anne Schütz; Antoine Loquet; Carolin Buhtz; Jason Greenwald; Roland Riek; Anja Böckmann; Beat H Meier
Journal:  J Mol Biol       Date:  2009-09-11       Impact factor: 5.469

4.  Conformation of a seven-helical transmembrane photosensor in the lipid environment.

Authors:  Lichi Shi; Izuru Kawamura; Kwang-Hwan Jung; Leonid S Brown; Vladimir Ladizhansky
Journal:  Angew Chem Int Ed Engl       Date:  2010-12-29       Impact factor: 15.336

5.  Extensive de novo solid-state NMR assignments of the 33 kDa C-terminal domain of the Ure2 prion.

Authors:  Birgit Habenstein; Christian Wasmer; Luc Bousset; Yannick Sourigues; Anne Schütz; Antoine Loquet; Beat H Meier; Ronald Melki; Anja Böckmann
Journal:  J Biomol NMR       Date:  2011-07-31       Impact factor: 2.835

6.  An improved broadband decoupling sequence for liquid crystals and solids.

Authors:  B M Fung; A K Khitrin; K Ermolaev
Journal:  J Magn Reson       Date:  2000-01       Impact factor: 2.229

7.  Assignment strategies for large proteins by magic-angle spinning NMR: the 21-kDa disulfide-bond-forming enzyme DsbA.

Authors:  Lindsay J Sperling; Deborah A Berthold; Terry L Sasser; Victoria Jeisy-Scott; Chad M Rienstra
Journal:  J Mol Biol       Date:  2010-04-13       Impact factor: 5.469

8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Application of phase sensitive two-dimensional correlated spectroscopy (COSY) for measurements of 1H-1H spin-spin coupling constants in proteins.

Authors:  D Marion; K Wüthrich
Journal:  Biochem Biophys Res Commun       Date:  1983-06-29       Impact factor: 3.575

10.  Prion fibrils of Ure2p assembled under physiological conditions contain highly ordered, natively folded modules.

Authors:  Antoine Loquet; Luc Bousset; Carole Gardiennet; Yannick Sourigues; Christian Wasmer; Birgit Habenstein; Anne Schütz; Beat H Meier; Ronald Melki; Anja Böckmann
Journal:  J Mol Biol       Date:  2009-09-11       Impact factor: 5.469

View more
  9 in total

1.  Protein resonance assignment at MAS frequencies approaching 100 kHz: a quantitative comparison of J-coupling and dipolar-coupling-based transfer methods.

Authors:  Susanne Penzel; Albert A Smith; Vipin Agarwal; Andreas Hunkeler; Mai-Liis Org; Ago Samoson; Anja Böckmann; Matthias Ernst; Beat H Meier
Journal:  J Biomol NMR       Date:  2015-08-13       Impact factor: 2.835

2.  SedNMR: a web tool for optimizing sedimentation of macromolecular solutes for SSNMR.

Authors:  Lucio Ferella; Claudio Luchinat; Enrico Ravera; Antonio Rosato
Journal:  J Biomol NMR       Date:  2013-11-17       Impact factor: 2.835

3.  Line-Broadening in Low-Temperature Solid-State NMR Spectra of Fibrils.

Authors:  Thomas Bauer; Claudio Dotta; Livia Balacescu; Julia Gath; Andreas Hunkeler; Anja Böckmann; Beat H Meier
Journal:  J Biomol NMR       Date:  2017-02-04       Impact factor: 2.835

4.  Optimization of band-selective homonuclear dipolar recoupling in solid-state NMR by a numerical phase search.

Authors:  Zhengfeng Zhang; Hui Liu; Jing Deng; Robert Tycko; Jun Yang
Journal:  J Chem Phys       Date:  2019-04-21       Impact factor: 3.488

Review 5.  1H-Detected Biomolecular NMR under Fast Magic-Angle Spinning.

Authors:  Tanguy Le Marchand; Tobias Schubeis; Marta Bonaccorsi; Piotr Paluch; Daniela Lalli; Andrew J Pell; Loren B Andreas; Kristaps Jaudzems; Jan Stanek; Guido Pintacuda
Journal:  Chem Rev       Date:  2022-05-10       Impact factor: 72.087

6.  Solid-State NMR Provides Evidence for Small-Amplitude Slow Domain Motions in a Multispanning Transmembrane α-Helical Protein.

Authors:  Daryl Good; Charlie Pham; Jacob Jagas; Józef R Lewandowski; Vladimir Ladizhansky
Journal:  J Am Chem Soc       Date:  2017-06-30       Impact factor: 15.419

7.  MAK33 antibody light chain amyloid fibrils are similar to oligomeric precursors.

Authors:  Manuel Hora; Riddhiman Sarkar; Vanessa Morris; Kai Xue; Elke Prade; Emma Harding; Johannes Buchner; Bernd Reif
Journal:  PLoS One       Date:  2017-07-26       Impact factor: 3.240

8.  Including Protons in Solid-State NMR Resonance Assignment and Secondary Structure Analysis: The Example of RNA Polymerase II Subunits Rpo4/7.

Authors:  Anahit Torosyan; Thomas Wiegand; Maarten Schledorn; Daniel Klose; Peter Güntert; Anja Böckmann; Beat H Meier
Journal:  Front Mol Biosci       Date:  2019-10-04

9.  NMR Assignment of Methyl Groups in Immobilized Proteins Using Multiple-Bond 13C Homonuclear Transfers, Proton Detection, and Very Fast MAS.

Authors:  Piotr Paluch; Rafal Augustyniak; Mai-Liis Org; Kalju Vanatalu; Ats Kaldma; Ago Samoson; Jan Stanek
Journal:  Front Mol Biosci       Date:  2022-03-29
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.