Literature DB >> 20566627

GTP-independent tRNA delivery to the ribosomal P-site by a novel eukaryotic translation factor.

Sergey E Dmitriev1, Ilya M Terenin, Dmitri E Andreev, Pavel A Ivanov, Jacov E Dunaevsky, William C Merrick, Ivan N Shatsky.   

Abstract

During translation, aminoacyl-tRNAs are delivered to the ribosome by specialized GTPases called translation factors. Here, we report the tRNA binding to the P-site of 40 S ribosomes by a novel GTP-independent factor eIF2D isolated from mammalian cells. The binding of tRNA(i)(Met) occurs after the AUG codon finds its position in the P-site of 40 S ribosomes, the situation that takes place during initiation complex formation on the hepatitis C virus internal ribosome entry site or on some other specific RNAs (leaderless mRNA and A-rich mRNAs with relaxed scanning dependence). Its activity in tRNA binding with 40 S subunits does not require the presence of the aminoacyl moiety. Moreover, the factor possesses the unique ability to deliver non-Met (elongator) tRNAs into the P-site of the 40 S subunit. The corresponding gene is found in all eukaryotes and includes an SUI1 domain present also in translation initiation factor eIF1. The versatility of translation initiation strategies in eukaryotes is discussed.

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Year:  2010        PMID: 20566627      PMCID: PMC2930676          DOI: 10.1074/jbc.M110.119693

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  51 in total

1.  Novel predicted RNA-binding domains associated with the translation machinery.

Authors:  L Aravind; E V Koonin
Journal:  J Mol Evol       Date:  1999-03       Impact factor: 2.395

2.  The suil suppressor locus in Saccharomyces cerevisiae encodes a translation factor that functions during tRNA(iMet) recognition of the start codon.

Authors:  H J Yoon; T F Donahue
Journal:  Mol Cell Biol       Date:  1992-01       Impact factor: 4.272

3.  Post-transcriptional regulation of gene expression in hippocampal neurons by glutamate receptor activation.

Authors:  E R Jakoi; D M Panchision; C M Gerwin; R J DeLorenzo
Journal:  Brain Res       Date:  1995-09-25       Impact factor: 3.252

4.  A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C and classical swine fever virus RNAs.

Authors:  T V Pestova; I N Shatsky; S P Fletcher; R J Jackson; C U Hellen
Journal:  Genes Dev       Date:  1998-01-01       Impact factor: 11.361

5.  Purification of protein synthesis initiation factors from rabbit reticulocytes.

Authors:  W C Merrick
Journal:  Methods Enzymol       Date:  1979       Impact factor: 1.600

6.  Eukaryotic ribosomes require initiation factors 1 and 1A to locate initiation codons.

Authors:  T V Pestova; S I Borukhov; C U Hellen
Journal:  Nature       Date:  1998-08-27       Impact factor: 49.962

7.  drp, a novel protein expressed at high cell density but not during growth arrest.

Authors:  J E Deyo; P J Chiao; M A Tainsky
Journal:  DNA Cell Biol       Date:  1998-05       Impact factor: 3.311

8.  Ribosome-messenger recognition in the absence of the Shine-Dalgarno interactions.

Authors:  N V Tzareva; V I Makhno; I V Boni
Journal:  FEBS Lett       Date:  1994-01-10       Impact factor: 4.124

9.  Retinal ligatin recognizes glycoproteins bearing oligosaccharides terminating in phosphodiester-linked glucose.

Authors:  R B Marchase; L A Koro; C M Kelly; D R McClay
Journal:  Cell       Date:  1982-04       Impact factor: 41.582

10.  Molecular cloning of the cDNA for ligatin.

Authors:  E R Jakoi; A L Brown; Y S Ho; R Snyderman
Journal:  J Cell Sci       Date:  1989-06       Impact factor: 5.285

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  77 in total

Review 1.  Cellular IRES-mediated translation: the war of ITAFs in pathophysiological states.

Authors:  Anton A Komar; Maria Hatzoglou
Journal:  Cell Cycle       Date:  2011-01-15       Impact factor: 4.534

2.  Reprogramming of translation in yeast cells impaired for ribosome recycling favors short, efficiently translated mRNAs.

Authors:  Swati Gaikwad; Fardin Ghobakhlou; David J Young; Jyothsna Visweswaraiah; Hongen Zhang; Alan G Hinnebusch
Journal:  Elife       Date:  2021-03-25       Impact factor: 8.140

3.  Crystal Structure of the C-terminal Domain of Human eIF2D and Its Implications on Eukaryotic Translation Initiation.

Authors:  Anand T Vaidya; Ivan B Lomakin; Newlyn N Joseph; Sergey E Dmitriev; Thomas A Steitz
Journal:  J Mol Biol       Date:  2017-07-21       Impact factor: 5.469

4.  Tma64/eIF2D, Tma20/MCT-1, and Tma22/DENR Recycle Post-termination 40S Subunits In Vivo.

Authors:  David J Young; Desislava S Makeeva; Fan Zhang; Aleksandra S Anisimova; Elena A Stolboushkina; Fardin Ghobakhlou; Ivan N Shatsky; Sergey E Dmitriev; Alan G Hinnebusch; Nicholas R Guydosh
Journal:  Mol Cell       Date:  2018-08-23       Impact factor: 17.970

Review 5.  Tinkering with translation: protein synthesis in virus-infected cells.

Authors:  Derek Walsh; Michael B Mathews; Ian Mohr
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-01-01       Impact factor: 10.005

Review 6.  Principles of translational control: an overview.

Authors:  John W B Hershey; Nahum Sonenberg; Michael B Mathews
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-12-01       Impact factor: 10.005

7.  The unfolded protein response in the protozoan parasite Toxoplasma gondii features translational and transcriptional control.

Authors:  Bradley R Joyce; Zoi Tampaki; Kami Kim; Ronald C Wek; William J Sullivan
Journal:  Eukaryot Cell       Date:  2013-05-10

8.  Translation from unconventional 5' start sites drives tumour initiation.

Authors:  Ataman Sendoel; Joshua G Dunn; Edwin H Rodriguez; Shruti Naik; Nicholas C Gomez; Brian Hurwitz; John Levorse; Brian D Dill; Daniel Schramek; Henrik Molina; Jonathan S Weissman; Elaine Fuchs
Journal:  Nature       Date:  2017-01-11       Impact factor: 49.962

9.  Mixed messages: Re-initiation factors regulate translation of animal mRNAs.

Authors:  Benedikt Obermayer; Nikolaus Rajewsky
Journal:  Cell Res       Date:  2014-08-22       Impact factor: 25.617

10.  Crystal structure of the DENR-MCT-1 complex revealed zinc-binding site essential for heterodimer formation.

Authors:  Ivan B Lomakin; Sergey E Dmitriev; Thomas A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-24       Impact factor: 11.205

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