Literature DB >> 28077873

Translation from unconventional 5' start sites drives tumour initiation.

Ataman Sendoel1, Joshua G Dunn2, Edwin H Rodriguez2, Shruti Naik1, Nicholas C Gomez1, Brian Hurwitz1, John Levorse1, Brian D Dill3, Daniel Schramek1, Henrik Molina3, Jonathan S Weissman2, Elaine Fuchs1.   

Abstract

We are just beginning to understand how translational control affects tumour initiation and malignancy. Here we use an epidermis-specific, in vivo ribosome profiling strategy to investigate the translational landscape during the transition from normal homeostasis to malignancy. Using a mouse model of inducible SOX2, which is broadly expressed in oncogenic RAS-associated cancers, we show that despite widespread reductions in translation and protein synthesis, certain oncogenic mRNAs are spared. During tumour initiation, the translational apparatus is redirected towards unconventional upstream initiation sites, enhancing the translational efficiency of oncogenic mRNAs. An in vivo RNA interference screen of translational regulators revealed that depletion of conventional eIF2 complexes has adverse effects on normal but not oncogenic growth. Conversely, the alternative initiation factor eIF2A is essential for cancer progression, during which it mediates initiation at these upstream sites, differentially skewing translation and protein expression. Our findings unveil a role for the translation of 5' untranslated regions in cancer, and expose new targets for therapeutic intervention.

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Year:  2017        PMID: 28077873      PMCID: PMC5287289          DOI: 10.1038/nature21036

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  57 in total

1.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

2.  Detecting actively translated open reading frames in ribosome profiling data.

Authors:  Lorenzo Calviello; Neelanjan Mukherjee; Emanuel Wyler; Henrik Zauber; Antje Hirsekorn; Matthias Selbach; Markus Landthaler; Benedikt Obermayer; Uwe Ohler
Journal:  Nat Methods       Date:  2015-12-14       Impact factor: 28.547

3.  Activities of Ligatin and MCT-1/DENR in eukaryotic translation initiation and ribosomal recycling.

Authors:  Maxim A Skabkin; Olga V Skabkina; Vidya Dhote; Anton A Komar; Christopher U T Hellen; Tatyana V Pestova
Journal:  Genes Dev       Date:  2010-08-15       Impact factor: 11.361

4.  Sox2 cooperates with inflammation-mediated Stat3 activation in the malignant transformation of foregut basal progenitor cells.

Authors:  Kuancan Liu; Ming Jiang; Yun Lu; Hao Chen; Jun Sun; Shaoping Wu; Wei-Yao Ku; Hiroshi Nakagawa; Yoshiaki Kita; Shoji Natsugoe; Jeffrey H Peters; Anil Rustgi; Mark W Onaitis; Amy Kiernan; Xiaoxin Chen; Jianwen Que
Journal:  Cell Stem Cell       Date:  2013-03-07       Impact factor: 24.633

5.  Characterization of mammalian eIF2A and identification of the yeast homolog.

Authors:  Wendy L Zoll; Lynn E Horton; Anton A Komar; Jack O Hensold; William C Merrick
Journal:  J Biol Chem       Date:  2002-07-19       Impact factor: 5.157

Review 6.  The scanning mechanism of eukaryotic translation initiation.

Authors:  Alan G Hinnebusch
Journal:  Annu Rev Biochem       Date:  2014-01-29       Impact factor: 23.643

7.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

8.  Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data.

Authors:  Joshua G Dunn; Jonathan S Weissman
Journal:  BMC Genomics       Date:  2016-11-22       Impact factor: 3.969

Review 9.  Could the eIF2α-Independent Translation Be the Achilles Heel of Cancer?

Authors:  Martin Holcik
Journal:  Front Oncol       Date:  2015-11-26       Impact factor: 6.244

10.  ETS family transcriptional regulators drive chromatin dynamics and malignancy in squamous cell carcinomas.

Authors:  Hanseul Yang; Daniel Schramek; Rene C Adam; Brice E Keyes; Ping Wang; Deyou Zheng; Elaine Fuchs
Journal:  Elife       Date:  2015-11-21       Impact factor: 8.140

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  109 in total

Review 1.  The Untranslated Regions of mRNAs in Cancer.

Authors:  Samantha L Schuster; Andrew C Hsieh
Journal:  Trends Cancer       Date:  2019-03-22

Review 2.  uORF-mediated translational control: recently elucidated mechanisms and implications in cancer.

Authors:  Hung-Hsi Chen; Woan-Yuh Tarn
Journal:  RNA Biol       Date:  2019-06-24       Impact factor: 4.652

Review 3.  Translational Control in Cancer.

Authors:  Nathaniel Robichaud; Nahum Sonenberg; Davide Ruggero; Robert J Schneider
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-07-01       Impact factor: 10.005

Review 4.  Small open reading frames and cellular stress responses.

Authors:  Alexandra Khitun; Travis J Ness; Sarah A Slavoff
Journal:  Mol Omics       Date:  2019-02-27

5.  Cell biology: Unconventional translation in cancer.

Authors:  Marianne Terndrup Pedersen; Kim B Jensen
Journal:  Nature       Date:  2017-01-11       Impact factor: 49.962

6.  Translation control of the immune checkpoint in cancer and its therapeutic targeting.

Authors:  Yichen Xu; Mauro Poggio; Hyun Yong Jin; Zhen Shi; Craig M Forester; Ying Wang; Craig R Stumpf; Lingru Xue; Emily Devericks; Lomon So; Hao G Nguyen; Alice Griselin; John D Gordan; Sarah E Umetsu; Siegfried H Reich; Stephen T Worland; Saurabh Asthana; Maria Barna; Kevin R Webster; John T Cunningham; Davide Ruggero
Journal:  Nat Med       Date:  2019-01-14       Impact factor: 53.440

Review 7.  Ribosome Profiling: Global Views of Translation.

Authors:  Nicholas T Ingolia; Jeffrey A Hussmann; Jonathan S Weissman
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-05-01       Impact factor: 10.005

8.  Pervasive functional translation of noncanonical human open reading frames.

Authors:  Jin Chen; Andreas-David Brunner; J Zachery Cogan; James K Nuñez; Alexander P Fields; Britt Adamson; Daniel N Itzhak; Jason Y Li; Matthias Mann; Manuel D Leonetti; Jonathan S Weissman
Journal:  Science       Date:  2020-03-06       Impact factor: 47.728

9.  Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues.

Authors:  Alejandro Reyes; Wolfgang Huber
Journal:  Nucleic Acids Res       Date:  2018-01-25       Impact factor: 16.971

10.  Development of a stress response therapy targeting aggressive prostate cancer.

Authors:  Hao G Nguyen; Crystal S Conn; Yae Kye; Lingru Xue; Craig M Forester; Janet E Cowan; Andrew C Hsieh; John T Cunningham; Charles Truillet; Feven Tameire; Michael J Evans; Christopher P Evans; Joy C Yang; Byron Hann; Constantinos Koumenis; Peter Walter; Peter R Carroll; Davide Ruggero
Journal:  Sci Transl Med       Date:  2018-05-02       Impact factor: 17.956

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