| Literature DB >> 20565855 |
Diana M Merino1, David W L Ma, David M Mutch.
Abstract
Perturbations in lipid metabolism characterize many of the chronic diseases currently plaguing our society, such as obesity, diabetes, and cardiovascular disease. Thus interventions that target plasma lipid levels remain a primary goal to manage these diseases. The determinants of plasma lipid levels are multi-factorial, consisting of both genetic and lifestyle components. Recent evidence indicates that fatty acid desaturases have an important role in defining plasma and tissue lipid profiles. This review will highlight the current state-of-knowledge regarding three desaturases (Scd-1, Fads1 and Fads2) and their potential roles in disease onset and development. Although research in rodent models has provided invaluable insight into the regulation and functions of these desaturases, the extent to which murine research can be translated to humans remains unclear. Evidence emerging from human-based research demonstrates that genetic variation in human desaturase genes affects enzyme activity and, consequently, disease risk factors. Moreover, this genetic variation may have a trans-generational effect via breastfeeding. Therefore inter-individual variation in desaturase function is attributed to both genetic and lifestyle components. As such, population-based research regarding the role of desaturases on disease risk is challenged by this complex gene-lifestyle paradigm. Unravelling the contribution of each component is paramount for understanding the inter-individual variation that exists in plasma lipid profiles, and will provide crucial information to develop personalized strategies to improve health management.Entities:
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Year: 2010 PMID: 20565855 PMCID: PMC2914715 DOI: 10.1186/1476-511X-9-63
Source DB: PubMed Journal: Lipids Health Dis ISSN: 1476-511X Impact factor: 3.876
Figure 1Fatty acid desaturases in PUFA and eicosanoid biosynthesis. The D6D (Fads2) and D5D (Fads1) enzymes play important roles in the biosynthesis of polyunsaturated fatty acids (PUFA). Moreover, these desaturases lead to the generation of pro-inflammatory (via n-6 PUFA) and anti-inflammatory (via n-3 PUFA) eicosanoids.
Summary of SNP-trait associations identified for Fads1 and Fads2
| dbSNP ID | Gene, Region | Allele | Population Size & Ethnicity | Association findings | Ref |
|---|---|---|---|---|---|
| G/T | n = 1453, Caucasian (ITA) | GG < GT&TT: ↑LA, ALA; ↓EDA, AA, EPA, LDL-C & total cholesterol in serum | [ | ||
| C/A | n = 727, Caucasian (GER) | CC < CA < AA: ↑LA, EDA, DGLA & ALA; ↓GLA, AA, DTA, EPA & DPA in serum | [ | ||
| C/T | n = 1144, Caucasian (EUR) | CC < CT < TT: ↑LA, DGLA, ALA; ↓AA, EPA, DHA in serum | [ | ||
| C/G | n = 876, Caucasian (ITA) | CC < CG < GG: ↑AA, AA/LA, EPA/ALA; ↓LA, ALA in RBC | [ | ||
| n = 658, Caucasian (ITA) | CC < CG < GG: ↑AA; ↓ALA, EDA in serum and RBC | [ | |||
| T/C | n = 1809, Caucasian (GER) | TT < TC < CC: ↑PC aa C36:3/PC aa C36:4 | [ | ||
| n = 422, Caucasian (UK) | TT < TC < CC: ↑PC aa C36:3/PC aa C36:4 | [ | |||
| A/G | n = 727, Caucasian (GER) | AA < AG < GG: ↑LA, EDA, DGLA & ALA; ↓GLA, AA, DTA, EPA & DPA in serum | [ | ||
| n = 69, 74% Caucasian (CAN) | AA < AG&GG: ↑LA; ↓AA in plasma and RBC during gestation | [ | |||
| n = 54, 74% Caucasian (CAN) | AA < AG < GG: ↑EDA; ↓AA, EPA, DPA in breast milk | [ | |||
| C/T | n = 727, Caucasian (GER) | CC < CT < TT: ↑LA, EDA, DGLA & ALA in serum; ↓GLA, AA, DTA, EPA & DPA in serum | [ | ||
| n = 658, Caucasian (ITA) | CC < CT < TT: ↑EDA in serum & RBC; ↓AA in serum & RBC | [ | |||
| T/C | n = 727, Caucasian (GER) | TT < TC < CC: ↑LA, EDA, DGLA, ALA in serum; ↓GLA, AA, DTA, EPA & DPA in serum | [ | ||
| n = 658, Caucasian (ITA) | TT < TC < CC: ↑EDA in serum & RBC; ↓AA in serum & RBC | [ | |||
| n = 309, Caucasian (DUT) | TT < TC < CC: ↑GA, EA LA, EDA, DGLA; ↓GLA, AA, DTA, DHA in plasma phospholipids | [ | |||
| C/T | n = 727, Caucasian (GER) | CC < CT&TT: ↑EDA in serum; ↓GLA, AA, DTA in serum | [ | ||
| n = 876, Caucasian (ITA) | CC < CT < TT: ↑LA, ALA in RBC; ↓AA, AA/LA in RBC | [ | |||
| n = 658, Caucasian (ITA) | CC < CT < TT: ↑LA in RBC, ↓AA in serum & RBC | [ | |||
| n = 1144, Caucasian (EUR) | CC < CT < TT: ↑LA, ALA; ↓AA in serum | [ | |||
| C/T | n = 1144, Caucasian (EUR) | CC < CT < TT: ↑LA, DGLA, ALA; ↓AA, EPA in serum | [ | ||
| C/G | n = 54, 74% Caucasian (CAN) | CC < CG&GG: ↓AA, EPA, DPA & DHA in breast milk | [ | ||
| n = 309, Caucasian (DUT) | CC < CG < GG: ↑GA, LA, EDA, DGLA; ↓AA, DTA, DHA in plasma phospholipids | [ | |||
| C/T | n = 727, Caucasian (GER) | CC < CT < TT: ↑LA, EDA, DGLA & ALA in serum; ↓GLA, AA, DTA, EPA & DPA in serum | [ | ||
| n = 876, Caucasian (ITA) | CC < CT < TT: ↑LA, ALA in RBC; ↓AA, AA/LA, EPA/ALA in RBC | [ | |||
| n = 658, Caucasian (ITA) | CC < CT < TT: ↑ALA, EDA, LA in serum & RBC; ↓AA in serum & RBC | [ | |||
| G/C | n = 727, Caucasian (GER) | GG < GC < CC: ↑LA, EDA & DGLA in serum; ↓GLA, AA, EPA & DPA in serum | [ | ||
| n = 876, Caucasian (ITA) | GG < GC&CC: ↑AA, AA/LA in RBC; ↓LA, EPA/ALA in RBC | [ | |||
| n = 658, Caucasian (ITA) | GG < GC < CC: ↑AA, in serum & RBC, ↓EDA in serum | [ | |||
| n = 1144, Caucasian (EUR) | GG < GC < CC: ↑LA, DGLA, ALA; ↓AA, EPA in serum | [ | |||
| A/G | n = 727, Caucasian (GER) | AA < AG < GG: ↑LA, EDA in serum; ↓AA in serum | [ | ||
| n = 1144, Caucasian (EUR) | AA < AG < GG: ↑LA, ALA; ↓AA, EPA in serum | [ | |||
| T/C | n = 876, Caucasian | TT < TC < CC: ↑LA, ALA in RBC; ↓AA, AA/LA, EPA/ALA in RBC | [ | ||
| n = 658, Caucasian (ITA) | TT < TC < CC: ↑EDA in serum ↓AA in serum & RBC | [ | |||
| n = 1144, Caucasian (EUR) | TT < TC < CC: ↑LA, DGLA, ALA; ↓AA in serum | [ | |||
| G/A | n = 1144, Caucasian (EUR) | GG < GA < AA: ↑LA, DGLA; ↓AA in serum | [ | ||
| T/C | n = 727, Caucasian (GER) | TT < TC < CC: ↑DGLA in serum; ↓AA in serum | [ | ||
| A/G | n = 727, Caucasian | AA < AG&GG: ↑ LA, EDA in serum; ↓GLA, AA, DTA in serum | [ | ||
| n = 1144, Caucasian (EUR) | AA < AG < GG: ↑LA, DGLA, ALA; ↓AA in serum | [ | |||
| A/T | n = 876, Caucasian (ITA) | AA < AT < TT: ↑LA in RBC; ↓AA, AA/LA in RBC | [ | ||
| n = 658, Caucasian (ITA) | AA < AT < TT: ↓AA in serum and RBC | [ | |||
| C/T | n = 727, Caucasian (GER) | CC < CT&TT: ↑AA, DTA in serum | [ | ||
| G/A | n = 658, Caucasian (ITA) | No significant association found with lipid species in serum or RBC | [ | ||
| n = 1144, Caucasian (EUR) | GG < GA < AA: ↑AA; ↓LA in serum | [ | |||
| G/C | n = 727, Caucasian (GER) | GG < GC < CC: ↑DGLA in serum | [ | ||
| n = 1144, Caucasian (EUR) | GG < GC < CC: ↑LA, ALA; ↓AA in serum | [ | |||
| C/T | n = 1144, Caucasian (EUR) | CC < CT < TT: ↑LA, DGLA, ALA; ↓AA, EPA | [ | ||
| C/T | n = 727, Caucasian (GER) | CC < CT < TT: ↑levels of LA, EDA, DGLA, ALA in serum; ↓GLA, AA, EPA, DPA in serum | [ | ||
| C/T | n = 876, Caucasian (ITA) | CC < CT < TT: ↑LA, ALA in RBC; ↓AA, AA/LA, EPA/ALA in RBC | [ | ||
| n = 658, Caucasian (ITA) | CC < CT < TT: ↑EDA, AA in serum | [ | |||
| T/C | n = 658, Caucasian (ITA) | TT < TC&CC: ↓AA in serum | [ | ||
| T/del* | n = 727, Caucasian | TT < T/del < del/del: ↑LA, EDA, DGLA, ALA in serum; ↓GLA, AA, DTA, EPA, DPA in serum | [ | ||
| n = 1694 (case), | TT < T/del < del/del: ↑ETE & EDA in adipose tissue; ↑ plasma TG; | [ | |||
| n = 876, Caucasian (ITA) | TT < T/del & del/del: ↑LA, ALA; ↓AA, AA/LA, EPA/ALA in RBC | [ | |||
| n = 658, Caucasian (ITA) | TT < T/del < del/del: ↑ALA, EDA in serum; ↑LA, EDA in RBC; ↓AA in serum and RBC | [ | |||
| n = 309, Caucasian (DUT) | TT < T/del < del/del: ↑GA, EA, LA, EDA, DGLA; ↓GLA, AA, DTA, DHA in plasma phospholipids | [ | |||
| G/A | n = 727, Caucasian (GER) | GG < GA&AA: ↑LA, DGLA in serum; ↓GLA, AA, EPA & DPA in serum | [ | ||
Several SNPs have been examined in Fads1 and Fads2; however, only significant associations (p < 0.05) are listed in this table. Associations between Fads genes and several fatty acids have been identified, including: palmitelaidic acid (PEA, C16:1n-7), gadoleic acid (GA, C20:1n-9), erucic acid (EA, C22:1n-9), linoleic acid (LA, C18:2n-6), γ-linoleic acid (GLA, C18:3n-6), eicosadienoic acid (EDA, C20:2n-6), dihomo-γ-linolenic acid (DGLA, C20:3n-6), arachidonic acid (AA, C20:4n-6), adrenic acid (DTA, C22:4n-6), α-linolenic acid (ALA, C18:3n-3), eicosatrienoic acid (ETE, 20:3n-3), eicosapentaenoic acid (EPA, C20:5n-3), docosapentaenoic acid (DPA, C22:5n-3), docosahexaenoic acid (DHA, C22:6n-3), phosphatidylcholine diacyl C36:3 (PC aa C36:3), and phosphatidylcholine diacyl C36:4 (PC aa C36:4). Other abbreviations: LDL-C, low-density lipoprotein cholesterol; TG, triglyceride; RBC, red blood cell; M/m, major and minor allele; and *del, deletion. A ↑ indicates an increase and a ↓ represents a decrease.
Single nucleotide polymorphisms (SNPs) in the Stearoyl-CoA desaturase (Scd-1) gene in four ethnic populations
| CEU | CHB | JPT | YRI |
|---|---|---|---|
This table highlights the ethnic differences in Scd-1 gene variation, using data from the International HapMap Project database (HapMap Data Rel/24phaseII Nov08, on NCBI B36 assembly, dbSNP b126). Data from the 4 populations was extracted: 1) CEU: CEPH- Utah residents with European ancestry, 2) CHB: Han Chinese in Beijing, China, 3) JPT: Japanese in Tokyo, Japan, and 4) YRI: Yoruba in Ibadan, Nigeria. Tag SNPs (tSNPs; in bold font) were consistently selected with Haploview software V4.1 using a minor allele frequency (MAF) > 5% and r2≥0.8.