Literature DB >> 20558749

Delineation of the Xrcc4-interacting region in the globular head domain of cernunnos/XLF.

Laurent Malivert1, Virginie Ropars, Marcela Nunez, Pascal Drevet, Simona Miron, Guilhem Faure, Raphael Guerois, Jean-Paul Mornon, Patrick Revy, Jean-Baptiste Charbonnier, Isabelle Callebaut, Jean-Pierre de Villartay.   

Abstract

In mammals, the majority of DNA double-strand breaks are processed by the nonhomologous end-joining (NHEJ) pathway, composed of seven factors: Ku70, Ku80, DNA-PKcs, Artemis, Xrcc4 (X4), DNA-ligase IV (L4), and Cernunnos/XLF. Cernunnos is part of the ligation complex, constituted by X4 and L4. To improve our knowledge on the structure and function of Cernunnos, we performed a systematic mutagenesis study on positions selected from an analysis of the recent three-dimensional structures of this factor. Ten of 27 screened mutants were nonfunctional in several DNA repair assays. Outside amino acids critical for the expression and stability of Cernunnos, we identified three amino acids (Arg(64), Leu(65), and Leu(115)) essential for the interaction with X4 and the proper function of Cernunnos. Docking the crystal structures of the two factors further validated this probable interaction surface of Cernunnos with X4.

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Year:  2010        PMID: 20558749      PMCID: PMC2924081          DOI: 10.1074/jbc.M110.138156

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  29 in total

1.  Crystal structure of an Xrcc4-DNA ligase IV complex.

Authors:  B L Sibanda; S E Critchlow; J Begun; X Y Pei; S P Jackson; T L Blundell; L Pellegrini
Journal:  Nat Struct Biol       Date:  2001-12

2.  Thermodynamic basis of resistance to HIV-1 protease inhibition: calorimetric analysis of the V82F/I84V active site resistant mutant.

Authors:  M J Todd; I Luque; A Velázquez-Campoy; E Freire
Journal:  Biochemistry       Date:  2000-10-03       Impact factor: 3.162

3.  HADDOCK: a protein-protein docking approach based on biochemical or biophysical information.

Authors:  Cyril Dominguez; Rolf Boelens; Alexandre M J J Bonvin
Journal:  J Am Chem Soc       Date:  2003-02-19       Impact factor: 15.419

Review 4.  The mechanisms of immune diversification and their disorders.

Authors:  Jean-Pierre de Villartay; Alain Fischer; Anne Durandy
Journal:  Nat Rev Immunol       Date:  2003-12       Impact factor: 53.106

5.  Tetramerization and DNA ligase IV interaction of the DNA double-strand break repair protein XRCC4 are mutually exclusive.

Authors:  Mauro Modesti; Murray S Junop; Rodolfo Ghirlando; Mandy van de Rakt; Martin Gellert; Wei Yang; Roland Kanaar
Journal:  J Mol Biol       Date:  2003-11-21       Impact factor: 5.469

6.  Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues.

Authors:  Tal Pupko; Rachel E Bell; Itay Mayrose; Fabian Glaser; Nir Ben-Tal
Journal:  Bioinformatics       Date:  2002       Impact factor: 6.937

7.  Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations.

Authors:  Jeffrey J Gray; Stewart Moughon; Chu Wang; Ora Schueler-Furman; Brian Kuhlman; Carol A Rohl; David Baker
Journal:  J Mol Biol       Date:  2003-08-01       Impact factor: 5.469

8.  Artemis, a novel DNA double-strand break repair/V(D)J recombination protein, is mutated in human severe combined immune deficiency.

Authors:  D Moshous; I Callebaut; R de Chasseval; B Corneo; M Cavazzana-Calvo; F Le Deist; I Tezcan; O Sanal; Y Bertrand; N Philippe; A Fischer; J P de Villartay
Journal:  Cell       Date:  2001-04-20       Impact factor: 41.582

9.  Electron microscopy of Xrcc4 and the DNA ligase IV-Xrcc4 DNA repair complex.

Authors:  María A Recuero-Checa; Andrew S Doré; Ernesto Arias-Palomo; Angel Rivera-Calzada; Sjors H W Scheres; Joseph D Maman; Laurence H Pearl; Oscar Llorca
Journal:  DNA Repair (Amst)       Date:  2009-12-03

10.  The metallo-beta-lactamase/beta-CASP domain of Artemis constitutes the catalytic core for V(D)J recombination.

Authors:  Catherine Poinsignon; Despina Moshous; Isabelle Callebaut; Régina de Chasseval; Isabelle Villey; Jean-Pierre de Villartay
Journal:  J Exp Med       Date:  2004-01-26       Impact factor: 14.307

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  29 in total

1.  Crystallization and preliminary X-ray diffraction analysis of the human XRCC4-XLF complex.

Authors:  Sara N Andres; Murray S Junop
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-10-27

2.  XLF regulates filament architecture of the XRCC4·ligase IV complex.

Authors:  Michal Hammel; Yaping Yu; Shujuan Fang; Susan P Lees-Miller; John A Tainer
Journal:  Structure       Date:  2010-11-10       Impact factor: 5.006

Review 3.  DNA-PK: a dynamic enzyme in a versatile DSB repair pathway.

Authors:  Anthony J Davis; Benjamin P C Chen; David J Chen
Journal:  DNA Repair (Amst)       Date:  2014-03-27

4.  Structural characterization of filaments formed by human Xrcc4-Cernunnos/XLF complex involved in nonhomologous DNA end-joining.

Authors:  Virginie Ropars; Pascal Drevet; Pierre Legrand; Sonia Baconnais; Jeremy Amram; Guilhem Faure; José A Márquez; Olivier Piétrement; Raphaël Guerois; Isabelle Callebaut; Eric Le Cam; Patrick Revy; Jean-Pierre de Villartay; Jean-Baptiste Charbonnier
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-18       Impact factor: 11.205

5.  TDP1 promotes assembly of non-homologous end joining protein complexes on DNA.

Authors:  Jinho Heo; Jing Li; Matthew Summerlin; Annette Hays; Sachin Katyal; Peter J McKinnon; Karin C Nitiss; John L Nitiss; Leslyn A Hanakahi
Journal:  DNA Repair (Amst)       Date:  2015-03-17

Review 6.  Mechanisms of DNA damage, repair, and mutagenesis.

Authors:  Nimrat Chatterjee; Graham C Walker
Journal:  Environ Mol Mutagen       Date:  2017-05-09       Impact factor: 3.216

Review 7.  Detection and repair of ionizing radiation-induced DNA double strand breaks: new developments in nonhomologous end joining.

Authors:  Chen Wang; Susan P Lees-Miller
Journal:  Int J Radiat Oncol Biol Phys       Date:  2013-02-20       Impact factor: 7.038

Review 8.  Nonhomologous end joining: a good solution for bad ends.

Authors:  Crystal A Waters; Natasha T Strande; David W Wyatt; John M Pryor; Dale A Ramsden
Journal:  DNA Repair (Amst)       Date:  2014-03-14

9.  A role for XLF in DNA repair and recombination in human somatic cells.

Authors:  Farjana Jahan Fattah; Junghun Kweon; Yongbao Wang; Eu Han Lee; Yinan Kan; Natalie Lichter; Natalie Weisensel; Eric A Hendrickson
Journal:  DNA Repair (Amst)       Date:  2014-01-21

Review 10.  XRCC4 and XLF form long helical protein filaments suitable for DNA end protection and alignment to facilitate DNA double strand break repair.

Authors:  Brandi L Mahaney; Michal Hammel; Katheryn Meek; John A Tainer; Susan P Lees-Miller
Journal:  Biochem Cell Biol       Date:  2013-02-05       Impact factor: 3.626

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