Literature DB >> 22102241

Crystallization and preliminary X-ray diffraction analysis of the human XRCC4-XLF complex.

Sara N Andres1, Murray S Junop.   

Abstract

XRCC4 and XLF are key proteins in the repair of DNA double-strand breaks through nonhomologous end-joining. Together, they form a complex that stimulates the ligation of double-strand breaks. Owing to the suggested filamentous nature of this complex, structural studies via X-ray crystallography have proven difficult. Multiple truncations of the XLF and XRCC4 proteins were cocrystallized, but yielded low-resolution diffraction (~20 Å). However, a combination of microseeding, dehydration and heavy metals improved the diffraction of XRCC4(Δ157)-XLF(Δ224) crystals to 3.9 Å resolution. Although molecular replacement alone was unable to produce a solution, when combined with the anomalous signal from tantalum bromide clusters initial phasing was successfully obtained.
© 2011 International Union of Crystallography. All rights reserved.

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Year:  2011        PMID: 22102241      PMCID: PMC3212460          DOI: 10.1107/S1744309111033549

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

1.  Delineation of the Xrcc4-interacting region in the globular head domain of cernunnos/XLF.

Authors:  Laurent Malivert; Virginie Ropars; Marcela Nunez; Pascal Drevet; Simona Miron; Guilhem Faure; Raphael Guerois; Jean-Paul Mornon; Patrick Revy; Jean-Baptiste Charbonnier; Isabelle Callebaut; Jean-Pierre de Villartay
Journal:  J Biol Chem       Date:  2010-06-17       Impact factor: 5.157

2.  XLF regulates filament architecture of the XRCC4·ligase IV complex.

Authors:  Michal Hammel; Yaping Yu; Shujuan Fang; Susan P Lees-Miller; John A Tainer
Journal:  Structure       Date:  2010-11-10       Impact factor: 5.006

3.  XLF interacts with the XRCC4-DNA ligase IV complex to promote DNA nonhomologous end-joining.

Authors:  Peter Ahnesorg; Philippa Smith; Stephen P Jackson
Journal:  Cell       Date:  2006-01-27       Impact factor: 41.582

4.  Structural and functional interaction between the human DNA repair proteins DNA ligase IV and XRCC4.

Authors:  Peï-Yu Wu; Philippe Frit; SriLakshmi Meesala; Stéphanie Dauvillier; Mauro Modesti; Sara N Andres; Ying Huang; JoAnn Sekiguchi; Patrick Calsou; Bernard Salles; Murray S Junop
Journal:  Mol Cell Biol       Date:  2009-03-30       Impact factor: 4.272

Review 5.  Nonhomologous DNA end joining (NHEJ) and chromosomal translocations in humans.

Authors:  Michael R Lieber; Jiafeng Gu; Haihui Lu; Noriko Shimazaki; Albert G Tsai
Journal:  Subcell Biochem       Date:  2010

6.  Crystal structure of human XLF: a twist in nonhomologous DNA end-joining.

Authors:  Sara N Andres; Mauro Modesti; Chun J Tsai; Gilbert Chu; Murray S Junop
Journal:  Mol Cell       Date:  2007-12-28       Impact factor: 17.970

7.  PHENIX: a comprehensive Python-based system for macromolecular structure solution.

Authors:  Paul D Adams; Pavel V Afonine; Gábor Bunkóczi; Vincent B Chen; Ian W Davis; Nathaniel Echols; Jeffrey J Headd; Li-Wei Hung; Gary J Kapral; Ralf W Grosse-Kunstleve; Airlie J McCoy; Nigel W Moriarty; Robert Oeffner; Randy J Read; David C Richardson; Jane S Richardson; Thomas C Terwilliger; Peter H Zwart
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

8.  Defective DNA repair and increased genomic instability in Cernunnos-XLF-deficient murine ES cells.

Authors:  Shan Zha; Frederick W Alt; Hwei-Ling Cheng; James W Brush; Gang Li
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-07       Impact factor: 11.205

9.  Crystal structure of human spliceosomal U1 snRNP at 5.5 A resolution.

Authors:  Daniel A Pomeranz Krummel; Chris Oubridge; Adelaine K W Leung; Jade Li; Kiyoshi Nagai
Journal:  Nature       Date:  2009-03-26       Impact factor: 49.962

10.  Crystal structure of human XLF/Cernunnos reveals unexpected differences from XRCC4 with implications for NHEJ.

Authors:  Yi Li; Dimitri Y Chirgadze; Victor M Bolanos-Garcia; Bancinyane L Sibanda; Owen R Davies; Peter Ahnesorg; Stephen P Jackson; Tom L Blundell
Journal:  EMBO J       Date:  2007-11-29       Impact factor: 11.598

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  8 in total

Review 1.  Structural insights into NHEJ: building up an integrated picture of the dynamic DSB repair super complex, one component and interaction at a time.

Authors:  Gareth J Williams; Michal Hammel; Sarvan Kumar Radhakrishnan; Dale Ramsden; Susan P Lees-Miller; John A Tainer
Journal:  DNA Repair (Amst)       Date:  2014-03-20

Review 2.  Repair of double-strand breaks by end joining.

Authors:  Kishore K Chiruvella; Zhuobin Liang; Thomas E Wilson
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-05-01       Impact factor: 10.005

3.  Yeast DNA ligase IV mutations reveal a nonhomologous end joining function of BRCT1 distinct from XRCC4/Lif1 binding.

Authors:  Kishore K Chiruvella; Brian M Renard; Shanda R Birkeland; Sham Sunder; Zhuobin Liang; Thomas E Wilson
Journal:  DNA Repair (Amst)       Date:  2014-12

Review 4.  XRCC4 and XLF form long helical protein filaments suitable for DNA end protection and alignment to facilitate DNA double strand break repair.

Authors:  Brandi L Mahaney; Michal Hammel; Katheryn Meek; John A Tainer; Susan P Lees-Miller
Journal:  Biochem Cell Biol       Date:  2013-02-05       Impact factor: 3.626

5.  Cooperative assembly of a protein-DNA filament for nonhomologous end joining.

Authors:  Chun J Tsai; Gilbert Chu
Journal:  J Biol Chem       Date:  2013-04-25       Impact factor: 5.157

6.  A human XRCC4-XLF complex bridges DNA.

Authors:  Sara N Andres; Alexandra Vergnes; Dejan Ristic; Claire Wyman; Mauro Modesti; Murray Junop
Journal:  Nucleic Acids Res       Date:  2012-01-27       Impact factor: 16.971

7.  Increasing the X-ray diffraction power of protein crystals by dehydration: the case of bovine serum albumin and a survey of literature data.

Authors:  Irene Russo Krauss; Filomena Sica; Carlo Andrea Mattia; Antonello Merlino
Journal:  Int J Mol Sci       Date:  2012-03-21       Impact factor: 6.208

Review 8.  Preserving genome integrity in human cells via DNA double-strand break repair.

Authors:  Ryan B Jensen; Eli Rothenberg
Journal:  Mol Biol Cell       Date:  2020-04-15       Impact factor: 4.138

  8 in total

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