| Literature DB >> 20553628 |
Fanjun Kong1, Jie Liu, Yongheng Liu, Bao Song, Hualing Wang, Wenchao Liu.
Abstract
BACKGROUND: Interleukin-10(IL-10) is a multifunctional cytokine with both immunosuppressive and antiangiogenic functions. Polymorphisms in the IL-10 gene promoter genetically determine interindividual differences in IL-10 production. This study was performed to determined whether polymorphisms in the IL-10 gene promoter were associated with breast cancer in a Chinese Han population.Entities:
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Year: 2010 PMID: 20553628 PMCID: PMC2907337 DOI: 10.1186/1756-9966-29-72
Source DB: PubMed Journal: J Exp Clin Cancer Res ISSN: 0392-9078
Primer sequences and reaction conditions for genotyping IL-10 polymorphisms
| Polymorphism | db SNP ID | PCR Primer sequence | RE | Product size(bp) |
|---|---|---|---|---|
| -1082 A/G | Rs1800870 | F: 5'-CTCGCTGCAACCCAACTGGC-3' | MnlI | G: 106+33 |
| -819 T/C | Rs1800871 | F: 5-TCATTCTATGTGCTGGAGATGG-3' | MaeIII | C:125+84 |
| -592 A/C | Rs1800872 | F: 5-GGTGAGCACTACCTGACTAGC-3' | RsaI | A:236+176 |
Abbreviations: dbSNP ID, database identifier; SNP, single-nucleotide polymorphism; PCR, polymerase chain reaction; RE, restriction endonuclease.
Characteristics of patients with breast cancer and healthy controls
| Variable | Patients, no. (%) | Controls, no. (%) | |
|---|---|---|---|
| n = 315 | n = 322 | ||
| Age(year) | 0.979 | ||
| < 48 | 165 (52.4) | 169 (52.5) | |
| ≥48 | 150 (47.6) | 153 (47.5) | |
| Menopausal status | 0.593 | ||
| Premenopausal | 144 (45.7) | 154 (47.8) | |
| Postmenopausal | 171 (54.3) | 168 (52.2) | |
| Tumor size (cm) | |||
| < 2 | 104 (33.0) | ||
| 2~5 | 167 (53.0) | ||
| ≥5 | 44 (14.0) | ||
| LN involvement | |||
| Positive | 117 (37.1) | ||
| Negative | 198 (62.9) | ||
| ER expression | |||
| Positive | 169 (53.7) | ||
| Negative | 146 (46.3) | ||
| PR expression | |||
| Positive | 166 (52.7) | ||
| Negative | 149 (47.3) | ||
Genotype and allele frequencies of IL-10 promoter polymorphisms in breast cancer patients and healthy controls
| Frequency, no.(%) | Frequency, no.(%) | ||||||
|---|---|---|---|---|---|---|---|
| Genetype | Patients n = 315 | Controls n = 322 | Alleles | Patients 2n = 630 | Controls 2n = 644 | ||
| -1082 A/G | 0.664 | -1082 A/G | 0.374 | ||||
| AA | 285 (90.5) | 285 (88.5) | A | 599 (95.1) | 605 (93.9) | ||
| AG | 29 (9.2) | 35 (10.9) | G | 31 (4.9) | 39 (6.1) | ||
| GG | 1 (0.3) | 2 (0.6) | |||||
| -819 T/C | 0.604 | -819 T/C | 0.315 | ||||
| TT | 119 (37.8) | 134 (41.6) | T | 373 (59.2) | 399 (62.0) | ||
| TC | 135 (42.9) | 131 (40.7) | C | 257 (40.8) | 245 (38.0) | ||
| CC | 61 (19.3) | 57 (17.7) | |||||
| -592 A/C | 0.604 | -592 A/C | 0.315 | ||||
| AA | 119 (37.8) | 134 (41.6) | A | 373 (59.2) | 399 (62.0) | ||
| AC | 135 (42.9) | 131 (40.7) | C | 257 (40.8) | 245 (38.0) | ||
| CC | 61 (19.3) | 57 (17.7) | |||||
Genotype frequencies of IL-10 and clinicopathologic features of breast cancer patients
| Clinicopathologic features | n | Genetype (%) | |||
|---|---|---|---|---|---|
| AA | AG+GG | ||||
| ER expression | 0.001 | 0.971 | |||
| Positive | 169 | 153 (90.5) | 16 (9.5) | ||
| Negative | 146 | 132 (90.4) | 14 (9.6) | ||
| PR expression | 0.209 | 0.647 | |||
| Positive | 166 | 149 (89.8) | 17 (10.2) | ||
| Negative | 149 | 136 (91.3) | 13 (8.7) | ||
| Tumor size (cm) | 6.471 | 0.039 | |||
| < 2 | 104 | 88 (84.6) | 16 (15.4) | ||
| 2~5 | 167 | 155 (92.8) | 12 (7.2) | ||
| ≥5 | 44 | 42 (95.5) | 2 (4.5) | ||
| LN involvement | 4.174 | 0.041 | |||
| Negative | 198 | 174 (87.9) | 24 (12.1) | ||
| Positive | 117 | 111 (94.9) | 6 (5.1) | ||
Frequencies of IL-10 Haplotypes(-1082, -810, -592) in breast cancer patients and healthy controls
| Patients, no. (%) | Controls, no. (%) | |||
|---|---|---|---|---|
| Possible haplotype | 2n = 630 | 2n = 644 | ||
| ATA | 356 (56.5) | 377 (58.5) | 1.857 | 0.603 |
| ACC | 243 (38.6) | 228 (35.4) | ||
| GTA | 17 (2.7) | 22 (3.4) | ||
| GCC | 14 (2.2) | 17 (2.6) | ||
Frequencies of IL-10 Haplotypes(-1082, -810, -592) and clinicopathologic features of breast cancer patients
| haplotype (%) | |||||
|---|---|---|---|---|---|
| Clinicopathologic features | 2n | ATA | non-ATA | ||
| ER expression | 0.026 | 0.872 | |||
| Positive | 338 | 192 (56.8) | 146 (43.2) | ||
| Negative | 292 | 164 (56.2) | 128 (43.8) | ||
| PR expression | 0.010 | 0.922 | |||
| Positive | 332 | 187 (56.3) | 145 (43.7) | ||
| Negative | 298 | 169 (56.7) | 129 (43.3) | ||
| Tumor size (cm) | 7.180 | 0.028 | |||
| < 2 | 208 | 105 (50.5) | 103 (49.5) | ||
| 2~5 | 334 | 192 (57.5) | 142 (42.5) | ||
| ≥5 | 88 | 59 (67.0) | 29 (33.0) | ||
| LN involvement | 5.246 | 0.022 | |||
| Negative | 396 | 210 (53.0) | 186 (47.0) | ||
| Positive | 234 | 146 (62.4) | 88 (37.6) | ||