Literature DB >> 20546801

Complete set of mitochondrial pan-edited mRNAs in Leishmania mexicana amazonensis LV78.

Dmitri A Maslov1.   

Abstract

Editing of mRNA transcribed from the mitochondrial cryptogenes ND8 (G1), ND9 (G2), G3, G4, ND3 (G5), RPS12 (G6) was investigated in Leishmania mexicana amazonensis, strain LV78, by amplification of the cDNA, cloning and sequencing. For each of these genes, extensively and partially edited transcripts were found to be relatively abundant compared to the respective pre-edited molecules. Moreover, the editing patterns observed in a majority of transcripts of each gene were consistent among themselves which allowed for inferring consensus editing sequences. The open reading frames contained in the consensus sequences were predicted to encode polypeptides that were highly similar to their counterparts in other species of Trypanosomatidae. Several kinetoplast DNA minicircles from this species available in the public domain were found to contain genes for guide RNAs which mediate editing of some of the mRNAs. The results indicate that the investigated strain of L. m. amazonensis has preserved its full editing capacity in spite of the long-term maintenance in culture. This property differs drastically from the other Leishmania species which lost some or all of the G1-G5 mRNA editing ability in culture. Copyright 2010 Elsevier B.V. All rights reserved.

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Year:  2010        PMID: 20546801      PMCID: PMC2913609          DOI: 10.1016/j.molbiopara.2010.05.013

Source DB:  PubMed          Journal:  Mol Biochem Parasitol        ISSN: 0166-6851            Impact factor:   1.759


  49 in total

1.  Evidence for the frequent use of TTG as the translation initiation codon of mitochondrial protein genes in the nematodes, Ascaris suum and Caenorhabditis elegans.

Authors:  R Okimoto; J L Macfarlane; D R Wolstenholme
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

2.  Maxicircle CR1 transcripts of Trypanosoma brucei are edited and developmentally regulated and encode a putative iron-sulfur protein homologous to an NADH dehydrogenase subunit.

Authors:  A E Souza; P J Myler; K Stuart
Journal:  Mol Cell Biol       Date:  1992-05       Impact factor: 4.272

3.  Transkinetoplastidy--a novel phenomenon involving bulk alterations of mitochondrion-kinetoplast DNA of a trypanosomatid protozoan.

Authors:  S Y Lee; S T Lee; K P Chang
Journal:  J Protozool       Date:  1992 Jan-Feb

4.  A model for RNA editing in kinetoplastid mitochondria: "guide" RNA molecules transcribed from maxicircle DNA provide the edited information.

Authors:  B Blum; N Bakalara; L Simpson
Journal:  Cell       Date:  1990-01-26       Impact factor: 41.582

5.  Kinetoplast DNA minicircles encode guide RNAs for editing of cytochrome oxidase subunit III mRNA.

Authors:  N R Sturm; L Simpson
Journal:  Cell       Date:  1990-06-01       Impact factor: 41.582

6.  The MURF3 gene of T. brucei contains multiple domains of extensive editing and is homologous to a subunit of NADH dehydrogenase.

Authors:  D J Koslowsky; G J Bhat; A L Perrollaz; J E Feagin; K Stuart
Journal:  Cell       Date:  1990-09-07       Impact factor: 41.582

7.  An extensively edited mitochondrial transcript in kinetoplastids encodes a protein homologous to ATPase subunit 6.

Authors:  G J Bhat; D J Koslowsky; J E Feagin; B L Smiley; K Stuart
Journal:  Cell       Date:  1990-06-01       Impact factor: 41.582

8.  Internal frameshifts within the mitochondrial genes for cytochrome oxidase subunit II and maxicircle unidentified reading frame 3 of Leishmania tarentolae are corrected by RNA editing: evidence for translation of the edited cytochrome oxidase subunit II mRNA.

Authors:  J M Shaw; D Campbell; L Simpson
Journal:  Proc Natl Acad Sci U S A       Date:  1989-08       Impact factor: 11.205

Review 9.  The mitochondrial genome of kinetoplastid protozoa: genomic organization, transcription, replication, and evolution.

Authors:  L Simpson
Journal:  Annu Rev Microbiol       Date:  1987       Impact factor: 15.500

10.  Major transcript of the frameshifted coxII gene from trypanosome mitochondria contains four nucleotides that are not encoded in the DNA.

Authors:  R Benne; J Van den Burg; J P Brakenhoff; P Sloof; J H Van Boom; M C Tromp
Journal:  Cell       Date:  1986-09-12       Impact factor: 41.582

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  11 in total

Review 1.  High throughput sequencing revolution reveals conserved fundamentals of U-indel editing.

Authors:  Sara L Zimmer; Rachel M Simpson; Laurie K Read
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-06-11       Impact factor: 9.957

Review 2.  The mitochondrial complex I of trypanosomatids--an overview of current knowledge.

Authors:  Margarida Duarte; Ana M Tomás
Journal:  J Bioenerg Biomembr       Date:  2014-06-25       Impact factor: 2.945

3.  Trypanosomatid mitochondrial RNA editing: dramatically complex transcript repertoires revealed with a dedicated mapping tool.

Authors:  Evgeny S Gerasimov; Anna A Gasparyan; Iosif Kaurov; Boris Tichý; Maria D Logacheva; Alexander A Kolesnikov; Julius Lukeš; Vyacheslav Yurchenko; Sara L Zimmer; Pavel Flegontov
Journal:  Nucleic Acids Res       Date:  2018-01-25       Impact factor: 16.971

4.  Evidence of RNA editing in Leishmania braziliensis promastigotes.

Authors:  César Ramírez; Concepción Puerta; Jose M Requena
Journal:  Parasitol Res       Date:  2010-12-04       Impact factor: 2.289

5.  Comparison of the Mitochondrial Genomes and Steady State Transcriptomes of Two Strains of the Trypanosomatid Parasite, Leishmania tarentolae.

Authors:  Larry Simpson; Stephen M Douglass; James A Lake; Matteo Pellegrini; Feng Li
Journal:  PLoS Negl Trop Dis       Date:  2015-07-23

6.  Mitochondrial genomics of human pathogenic parasite Leishmania (Viannia) panamensis.

Authors:  Daniel Alfonso Urrea; Omar Triana-Chavez; Juan F Alzate
Journal:  PeerJ       Date:  2019-07-02       Impact factor: 2.984

Review 7.  Separating the Wheat from the Chaff: RNA Editing and Selection of Translatable mRNA in Trypanosome Mitochondria.

Authors:  Dmitri A Maslov
Journal:  Pathogens       Date:  2019-07-18

8.  Leishmania Mitochondrial Genomes: Maxicircle Structure and Heterogeneity of Minicircles.

Authors:  Esther Camacho; Alberto Rastrojo; África Sanchiz; Sandra González-de la Fuente; Begoña Aguado; Jose M Requena
Journal:  Genes (Basel)       Date:  2019-09-26       Impact factor: 4.096

9.  Small RNAs derived from tRNAs and rRNAs are highly enriched in exosomes from both old and new world Leishmania providing evidence for conserved exosomal RNA Packaging.

Authors:  Ulrike Lambertz; Mariana E Oviedo Ovando; Elton J R Vasconcelos; Peter J Unrau; Peter J Myler; Neil E Reiner
Journal:  BMC Genomics       Date:  2015-03-05       Impact factor: 3.969

10.  Mitochondrial dual-coding genes in Trypanosoma brucei.

Authors:  Laura E Kirby; Donna Koslowsky
Journal:  PLoS Negl Trop Dis       Date:  2017-10-09
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