| Literature DB >> 20540786 |
Seong-Jang Kim1, Sang-Hyun Hwang, In Joo Kim, Min Ki Lee, Chang Hun Lee, Sang-Yull Lee, Eun Yup Lee.
Abstract
BACKGROUND: Positron emission tomography imaging of lung cancers with 2-[fluorine-18]-fluoro-2-deoxy-D-glucose is a non-invasive diagnostic, and prognostic tool that measures tumor metabolism. We have analyzed the effect of solute carrier family 2 (facilitated glucose transporter), member 1 polymorphisms on 2-[fluorine-18]-fluoro-2-deoxy-D-glucose-uptake with a combination of polymorphisms of hypoxia-inducible factor 1 alpha, apurinic/apyimidinic endonuclease, and vascular endothelial growth factor A in a hypoxia-related pathway.Entities:
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Year: 2010 PMID: 20540786 PMCID: PMC2898683 DOI: 10.1186/1756-9966-29-69
Source DB: PubMed Journal: J Exp Clin Cancer Res ISSN: 0392-9078
Primers for amplification and allele frequencies of hypoxia-related polymorphisms
| Gene | SNP name | Primer sequence | Tm | |
|---|---|---|---|---|
| +936C>T | Forward | CACTTTGGGTCCGGAGGG | ||
| Reverse | TGATTTAGCAGCAAGAAAAATAAA | 55 | ||
| Genotyping | GGCGAATCCAATTCCAAGAGGGACC | |||
| P582S | Forward | TATATCCCAATGGATGATGACTT | ||
| Reverse | TTCTTGTATTTGAGTCTGCTGG | 55 | ||
| Genotyping | GTTACGTTCCTTCGATCAGTTGTCA | |||
| A588T | Forward | AGATTTAGACTTGGAGATGTTAGCTC | ||
| Reverse | AATACTGTAACTGTGCTTTGAGGAC | 55 | ||
| Genotyping | GTTGTCAYCATTAGAAAGCAGTTCC | |||
| -2841A>T | Forward | CCTTTGCACATGCTCTTC | ||
| Reverse | GCCACCTTGTCCTTCTCT | 60 | ||
| Genotyping | CCTGTGGTACAAGTTCTGC | |||
| D148E | Forward | CAGTGCCCACTCAAAGTT | ||
| Reverse | CTTGCGAAAGGCTTCAT | 60 | ||
| Genotyping | GGCCTTCCTGATCATGCTCCTC | |||
Patient characteristics
| Adenocarcinoma | Squamous cell carcinoma | ||
|---|---|---|---|
| Age | |||
| Male | 64.2 ± 8.5 (n = 41) | 66.0 ± 8.1 (n = 73) | |
| Female | 59.2 ± 10.8 (n = 34) | 67.7 ± 10.0 (n = 6) | |
| Smoking habit | |||
| Never | 35 (46.7%) | 7 (8.9%) | |
| Smoker | 40 (53.3%) | 72 (91.1%) | |
| Stage | |||
| Stage I + II | 14 (18.7%) | 12 (15.2%) | |
| Stage III + IV | 61 (81.3%) | 67 (84.8%) | |
| T stage | |||
| 1 | 12 (16.0%) | 4 (5.1%) | |
| 2 | 2 (2.7%) | 8 (10.1%) | |
| 3 | 19 (25.3%) | 43 (54.4%) | |
| 4 | 42 (56.0%) | 24 (30.4%) |
Allele frequencies of SLC2A1, VEGFA, APEX1, and HIF1A polymorphisms
| Target gene polymorphism | Genotype | No. patients | (%) | Allele frequencies | Hardy-Weinberg equilibrium | |
|---|---|---|---|---|---|---|
| AA | 78 | (51.7%) | A:T | 0.705:0.295 | 0.2579 | |
| AT | 57 | (37.7%) | ||||
| TT | 16 | (10.6%) | ||||
| CC | 102 | (67.1%) | C:T | 0.819:0.181 | 0.2579 | |
| CT | 45 | (29.6%) | ||||
| TT | 5 | (3.3%) | ||||
| TT | 55 | (36.4%) | T:G | 0.589:0.411 | 0.3929 | |
| TG | 68 | (45.0%) | ||||
| GG | 28 | (18.5%) | ||||
| CC | 139 | (90.8%) | C:T | 0.954:0.046 | 0.5541 | |
| CT | 14 | (9.2%) | ||||
| TT | 0 | (0.0%) | ||||
| GG | 137 | (90.1%) | G:A | 0.951:0.049 | 0.5219 | |
| GA | 15 | (9.9%) | ||||
| AA | 0 | (0.0%) |
Association between gene polymorphisms of hypoxia-related genes and the mean SUVmax in patients with squamous cell carcinoma (n = 78)
| Genes | Genotype | SUVmax | P* | Domonant model | SUVmax | Recessive mode | SUVmax | ||
|---|---|---|---|---|---|---|---|---|---|
| AA (n = 41) | 9.40 ± 2.63 | 0.155 | AA | 9.40 ± 2.63 | 0.565 | AA + AT | 9.07 ± 2.79 | ||
| AT (n = 29) | 8.60 ± 2.98 | AT + TT | 9.04 ± 2.94 | TT | 10.64 ± 2.26 | ||||
| TT (n = 8) | 10.64 ± 2.26 | ||||||||
| CC (n = 54) | 9.29 ± 2.66 | 0.816 | CC | 9.29 ± 2.66 | 0.774 | CC + CT | 9.20 ± 2.80 | ||
| CT (n = 20) | 8.95 ± 3.23 | CT + TT | 9.10 ± 3.06 | TT | 9.83 ± 2.25 | ||||
| TT (n = 4) | 9.83 ± 2.25 | ||||||||
| TT (n = 28) | 8.89 ± 3.04 | 0.522 | TT | 8.89 ± 3.04 | 0.412 | TT + TG | 9.30 ± 2.90 | ||
| TG (n = 34) | 9.64 ± 2.79 | TG + GG | 9.43 ± 2.62 | GG | 8.97 ± 2.23 | ||||
| GG (n = 16) | 8.97 ± 2.23 | ||||||||
| CC (n = 69) | 9.32 ± 2.84 | 0.671 | |||||||
| CT (n = 10) | 8.92 ± 2.35 | ||||||||
| GG (n = 68) | 9.18 ± 2.74 | 0.664 | |||||||
| GA (n = 10) | 9.59 ± 3.11 |
*ANOVA † t-test
Association between the SLC2A1 -2841A>T gene polymorphism and the mean SUVmax in patients with squamous cell carcinoma according to the APEX1 genotype
| Gene | genotype | SUVmax | Dominant model | SUVmax | Recessive mode | SUVmax | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| TT | AA (n = 13) | 8.68 ± 2.40 | 0.086 | AA | 8.68 ± 2.40 | 0.742 | AA + AT | 8.46 ± 2.90 | 0.028 | |
| AT (n = 12) | 8.22 ± 3.47 | AT + TT | 9.07 ± 3.58 | TT | 12.47 ± 1.33 | |||||
| TT (n = 3) | 12.47 ± 1.33 | |||||||||
| TG | AA (n = 20) | 9.72 ± 3.00 | 0.984 | AA | 9.72 ± 3.00 | 0.857 | AA + AT | 9.66 ± 2.93 | 0.932 | |
| AT (n = 9) | 9.53 ± 2.94 | AT + TT | 9.54 ± 2.56 | TT | 9.54 ± 2.00 | |||||
| TT (n = 5) | 9.54 ± 2.01 | |||||||||
| GG | AA (n = 8) | 9.81 ± 1.97 | AA | 9.81 ± 1.97 | 0.134 | AA + AT | 8.97 ± 2.23 | |||
| AT (n = 8) | 8.13 ± 2.26 | AT + TT | 8.13 ± 2.26 | TT | ||||||
| TT (n = 0) |
*ANOVA
† t-test