Literature DB >> 21752787

Drosophila RNAi screening in a postgenomic world.

Chris Bakal1.   

Abstract

Drosophila melanogaster has a long history as a model organism with several unique features that make it an ideal research tool for the study of the relationship between genotype and phenotype. Importantly fundamental genetic principles as well as key human disease genes have been uncovered through the use of Drosophila. The contribution of the fruit fly to science and medicine continues in the postgenomic era as cell-based Drosophila RNAi screens are a cost-effective and scalable enabling technology that can be used to quantify the contribution of different genes to diverse cellular processes. Drosophila high-throughput screens can also be used as integral part of systems-level approaches to describe the architecture and dynamics of cellular networks.

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Year:  2011        PMID: 21752787      PMCID: PMC3144739          DOI: 10.1093/bfgp/elr015

Source DB:  PubMed          Journal:  Brief Funct Genomics        ISSN: 2041-2649            Impact factor:   4.241


  84 in total

1.  A genome-wide Drosophila RNAi screen identifies DYRK-family kinases as regulators of NFAT.

Authors:  Yousang Gwack; Sonia Sharma; Julie Nardone; Bogdan Tanasa; Alina Iuga; Sonal Srikanth; Heidi Okamura; Diana Bolton; Stefan Feske; Patrick G Hogan; Anjana Rao
Journal:  Nature       Date:  2006-03-01       Impact factor: 49.962

2.  Design and implementation of high-throughput RNAi screens in cultured Drosophila cells.

Authors:  Nadire Ramadan; Ian Flockhart; Matthew Booker; Norbert Perrimon; Bernard Mathey-Prevot
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

3.  A Drosophila resource of transgenic RNAi lines for neurogenetics.

Authors:  Jian-Quan Ni; Lu-Ping Liu; Richard Binari; Robert Hardy; Hye-Seok Shim; Amanda Cavallaro; Matthew Booker; Barret D Pfeiffer; Michele Markstein; Hui Wang; Christians Villalta; Todd R Laverty; Lizabeth A Perkins; Norbert Perrimon
Journal:  Genetics       Date:  2009-06-01       Impact factor: 4.562

4.  Functional organization of the yeast proteome by systematic analysis of protein complexes.

Authors:  Anne-Claude Gavin; Markus Bösche; Roland Krause; Paola Grandi; Martina Marzioch; Andreas Bauer; Jörg Schultz; Jens M Rick; Anne-Marie Michon; Cristina-Maria Cruciat; Marita Remor; Christian Höfert; Malgorzata Schelder; Miro Brajenovic; Heinz Ruffner; Alejandro Merino; Karin Klein; Manuela Hudak; David Dickson; Tatjana Rudi; Volker Gnau; Angela Bauch; Sonja Bastuck; Bettina Huhse; Christina Leutwein; Marie-Anne Heurtier; Richard R Copley; Angela Edelmann; Erich Querfurth; Vladimir Rybin; Gerard Drewes; Manfred Raida; Tewis Bouwmeester; Peer Bork; Bertrand Seraphin; Bernhard Kuster; Gitte Neubauer; Giulio Superti-Furga
Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

5.  Functional genomic analysis of the Wnt-wingless signaling pathway.

Authors:  Ramanuj DasGupta; Ajamete Kaykas; Randall T Moon; Norbert Perrimon
Journal:  Science       Date:  2005-04-07       Impact factor: 47.728

6.  Too many roads not taken.

Authors:  Aled M Edwards; Ruth Isserlin; Gary D Bader; Stephen V Frye; Timothy M Willson; Frank H Yu
Journal:  Nature       Date:  2011-02-10       Impact factor: 49.962

7.  Modular epistasis in yeast metabolism.

Authors:  Daniel Segrè; Alexander Deluna; George M Church; Roy Kishony
Journal:  Nat Genet       Date:  2004-12-12       Impact factor: 38.330

8.  Identification of an Aurora-A/PinsLINKER/Dlg spindle orientation pathway using induced cell polarity in S2 cells.

Authors:  Christopher A Johnston; Keiko Hirono; Kenneth E Prehoda; Chris Q Doe
Journal:  Cell       Date:  2009-09-18       Impact factor: 41.582

9.  Cross-species RNAi rescue platform in Drosophila melanogaster.

Authors:  Shu Kondo; Matthew Booker; Norbert Perrimon
Journal:  Genetics       Date:  2009-08-31       Impact factor: 4.562

10.  Phosphorylation networks regulating JNK activity in diverse genetic backgrounds.

Authors:  Chris Bakal; Rune Linding; Flora Llense; Elleard Heffern; Enrique Martin-Blanco; Tony Pawson; Norbert Perrimon
Journal:  Science       Date:  2008-10-17       Impact factor: 47.728

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  8 in total

1.  Efficient shRNA-mediated inhibition of gene expression in zebrafish.

Authors:  Gianluca De Rienzo; Jennifer H Gutzman; Hazel Sive
Journal:  Zebrafish       Date:  2012-07-12       Impact factor: 1.985

2.  Finding the shape-shifter genes.

Authors:  Michael F Olson
Journal:  Nat Cell Biol       Date:  2013-07       Impact factor: 28.824

3.  Combined Gene Expression and RNAi Screening to Identify Alkylation Damage Survival Pathways from Fly to Human.

Authors:  Alfeu Zanotto-Filho; Ravi Dashnamoorthy; Eva Loranc; Luis H T de Souza; José C F Moreira; Uthra Suresh; Yidong Chen; Alexander J R Bishop
Journal:  PLoS One       Date:  2016-04-21       Impact factor: 3.240

Review 4.  Does your gene need a background check? How genetic background impacts the analysis of mutations, genes, and evolution.

Authors:  Christopher H Chandler; Sudarshan Chari; Ian Dworkin
Journal:  Trends Genet       Date:  2013-02-28       Impact factor: 11.639

Review 5.  RNAi screening in Drosophila cells and in vivo.

Authors:  Stephanie E Mohr
Journal:  Methods       Date:  2014-02-24       Impact factor: 3.608

Review 6.  Cell-based genomic screening: elucidating virus-host interactions.

Authors:  Debasis Panda; Sara Cherry
Journal:  Curr Opin Virol       Date:  2012-11-02       Impact factor: 7.090

7.  Clueless, a protein required for mitochondrial function, interacts with the PINK1-Parkin complex in Drosophila.

Authors:  Aditya Sen; Sreehari Kalvakuri; Rolf Bodmer; Rachel T Cox
Journal:  Dis Model Mech       Date:  2015-04-20       Impact factor: 5.758

8.  A genome-wide CRISPR library for high-throughput genetic screening in Drosophila cells.

Authors:  Andrew R Bassett; Lesheng Kong; Ji-Long Liu
Journal:  J Genet Genomics       Date:  2015-04-18       Impact factor: 4.275

  8 in total

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