Literature DB >> 20514070

Voluntary exploratory data submissions to the US FDA and the EMA: experience and impact.

Federico M Goodsaid1, Shashi Amur, Jiri Aubrecht, Michael E Burczynski, Kevin Carl, Jennifer Catalano, Rosane Charlab, Sandra Close, Catherine Cornu-Artis, Laurent Essioux, Albert J Fornace, Lois Hinman, Huixiao Hong, Ian Hunt, David Jacobson-Kram, Ansar Jawaid, David Laurie, Lawrence Lesko, Heng-Hong Li, Klaus Lindpaintner, James Mayne, Peter Morrow, Marisa Papaluca-Amati, Timothy W Robison, John Roth, Ina Schuppe-Koistinen, Leming Shi, Olivia Spleiss, Weida Tong, Sharada L Truter, Jacky Vonderscher, Agnes Westelinck, Li Zhang, Issam Zineh.   

Abstract

Heterogeneity in the underlying mechanisms of disease processes and inter-patient variability in drug responses are major challenges in drug development. To address these challenges, biomarker strategies based on a range of platforms, such as microarray gene-expression technologies, are increasingly being applied to elucidate these sources of variability and thereby potentially increase drug development success rates. With the aim of enhancing understanding of the regulatory significance of such biomarker data by regulators and sponsors, the US Food and Drug Administration initiated a programme in 2004 to allow sponsors to submit exploratory genomic data voluntarily, without immediate regulatory impact. In this article, a selection of case studies from the first 5 years of this programme - which is now known as the voluntary exploratory data submission programme, and also involves collaboration with the European Medicines Agency - are discussed, and general lessons are highlighted.

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Year:  2010        PMID: 20514070     DOI: 10.1038/nrd3116

Source DB:  PubMed          Journal:  Nat Rev Drug Discov        ISSN: 1474-1776            Impact factor:   84.694


  45 in total

Review 1.  A review of the genotoxicity of marketed pharmaceuticals.

Authors:  R D Snyder; J W Green
Journal:  Mutat Res       Date:  2001-05       Impact factor: 2.433

Review 2.  Indirect mechanisms of genotoxicity.

Authors:  Micheline Kirsch-Volders; Annelies Vanhauwaert; Ursula Eichenlaub-Ritter; Ilse Decordier
Journal:  Toxicol Lett       Date:  2003-04-11       Impact factor: 4.372

Review 3.  Translation of pharmacogenomics and pharmacogenetics: a regulatory perspective.

Authors:  Lawrence J Lesko; Janet Woodcock
Journal:  Nat Rev Drug Discov       Date:  2004-09       Impact factor: 84.694

4.  Evaluation of DNA microarray results with quantitative gene expression platforms.

Authors:  Roger D Canales; Yuling Luo; James C Willey; Bradley Austermiller; Catalin C Barbacioru; Cecilie Boysen; Kathryn Hunkapiller; Roderick V Jensen; Charles R Knight; Kathleen Y Lee; Yunqing Ma; Botoul Maqsodi; Adam Papallo; Elizabeth Herness Peters; Karen Poulter; Patricia L Ruppel; Raymond R Samaha; Leming Shi; Wen Yang; Lu Zhang; Federico M Goodsaid
Journal:  Nat Biotechnol       Date:  2006-09       Impact factor: 54.908

Review 5.  Comprehensive assessment of metabolic enzyme and transporter genes using the Affymetrix Targeted Genotyping System.

Authors:  Carmen Dumaual; Xin Miao; Thomas M Daly; Carsten Bruckner; Reuben Njau; Dong-Jing Fu; Sandra Close-Kirkwood; Nancy Bauer; Nancy Watanabe; Paul Hardenbol; Richard D Hockett
Journal:  Pharmacogenomics       Date:  2007-03       Impact factor: 2.533

6.  Multiplex assay for comprehensive genotyping of genes involved in drug metabolism, excretion, and transport.

Authors:  Thomas M Daly; Carmen M Dumaual; Xin Miao; Mark W Farmen; Reuben K Njau; Dong-Jing Fu; Nancy L Bauer; Sandra Close; Nancy Watanabe; Carsten Bruckner; Paul Hardenbol; Richard D Hockett
Journal:  Clin Chem       Date:  2007-05-17       Impact factor: 8.327

7.  The effect of methylxanthines on chromosomes of human lyphocytes in culture.

Authors:  D Weinstein; I Mauer; M L Katz; S Kazmer
Journal:  Mutat Res       Date:  1975-02       Impact factor: 2.433

8.  A systems biology approach to understanding elevated serum alanine transaminase levels in a clinical trial with ximelagatran.

Authors:  Ulf Andersson; Johan Lindberg; Shunghuang Wang; Raji Balasubramanian; Maritha Marcusson-Ståhl; Mira Hannula; Chenhui Zeng; Peter J Juhasz; Johan Kolmert; Jonas Bäckström; Lars Nord; Kerstin Nilsson; Steve Martin; Björn Glinghammar; Karin Cederbrant; Ina Schuppe-Koistinen
Journal:  Biomarkers       Date:  2009-12       Impact factor: 2.658

Review 9.  Protocol biopsies in renal transplantation: prognostic value of structural monitoring.

Authors:  D Serón; F Moreso
Journal:  Kidney Int       Date:  2007-06-27       Impact factor: 10.612

10.  Disease-associated expression profiles in peripheral blood mononuclear cells from patients with advanced renal cell carcinoma.

Authors:  Natalie C Twine; Jennifer A Stover; Bonnie Marshall; Gary Dukart; Manuel Hidalgo; Walter Stadler; Theodore Logan; Janice Dutcher; Gary Hudes; Andrew J Dorner; Donna K Slonim; William L Trepicchio; Michael E Burczynski
Journal:  Cancer Res       Date:  2003-09-15       Impact factor: 12.701

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  20 in total

1.  The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.

Authors:  Leming Shi; Gregory Campbell; Wendell D Jones; Fabien Campagne; Zhining Wen; Stephen J Walker; Zhenqiang Su; Tzu-Ming Chu; Federico M Goodsaid; Lajos Pusztai; John D Shaughnessy; André Oberthuer; Russell S Thomas; Richard S Paules; Mark Fielden; Bart Barlogie; Weijie Chen; Pan Du; Matthias Fischer; Cesare Furlanello; Brandon D Gallas; Xijin Ge; Dalila B Megherbi; W Fraser Symmans; May D Wang; John Zhang; Hans Bitter; Benedikt Brors; Pierre R Bushel; Max Bylesjo; Minjun Chen; Jie Cheng; Jing Cheng; Jeff Chou; Timothy S Davison; Mauro Delorenzi; Youping Deng; Viswanath Devanarayan; David J Dix; Joaquin Dopazo; Kevin C Dorff; Fathi Elloumi; Jianqing Fan; Shicai Fan; Xiaohui Fan; Hong Fang; Nina Gonzaludo; Kenneth R Hess; Huixiao Hong; Jun Huan; Rafael A Irizarry; Richard Judson; Dilafruz Juraeva; Samir Lababidi; Christophe G Lambert; Li Li; Yanen Li; Zhen Li; Simon M Lin; Guozhen Liu; Edward K Lobenhofer; Jun Luo; Wen Luo; Matthew N McCall; Yuri Nikolsky; Gene A Pennello; Roger G Perkins; Reena Philip; Vlad Popovici; Nathan D Price; Feng Qian; Andreas Scherer; Tieliu Shi; Weiwei Shi; Jaeyun Sung; Danielle Thierry-Mieg; Jean Thierry-Mieg; Venkata Thodima; Johan Trygg; Lakshmi Vishnuvajjala; Sue Jane Wang; Jianping Wu; Yichao Wu; Qian Xie; Waleed A Yousef; Liang Zhang; Xuegong Zhang; Sheng Zhong; Yiming Zhou; Sheng Zhu; Dhivya Arasappan; Wenjun Bao; Anne Bergstrom Lucas; Frank Berthold; Richard J Brennan; Andreas Buness; Jennifer G Catalano; Chang Chang; Rong Chen; Yiyu Cheng; Jian Cui; Wendy Czika; Francesca Demichelis; Xutao Deng; Damir Dosymbekov; Roland Eils; Yang Feng; Jennifer Fostel; Stephanie Fulmer-Smentek; James C Fuscoe; Laurent Gatto; Weigong Ge; Darlene R Goldstein; Li Guo; Donald N Halbert; Jing Han; Stephen C Harris; Christos Hatzis; Damir Herman; Jianping Huang; Roderick V Jensen; Rui Jiang; Charles D Johnson; Giuseppe Jurman; Yvonne Kahlert; Sadik A Khuder; Matthias Kohl; Jianying Li; Li Li; Menglong Li; Quan-Zhen Li; Shao Li; Zhiguang Li; Jie Liu; Ying Liu; Zhichao Liu; Lu Meng; Manuel Madera; Francisco Martinez-Murillo; Ignacio Medina; Joseph Meehan; Kelci Miclaus; Richard A Moffitt; David Montaner; Piali Mukherjee; George J Mulligan; Padraic Neville; Tatiana Nikolskaya; Baitang Ning; Grier P Page; Joel Parker; R Mitchell Parry; Xuejun Peng; Ron L Peterson; John H Phan; Brian Quanz; Yi Ren; Samantha Riccadonna; Alan H Roter; Frank W Samuelson; Martin M Schumacher; Joseph D Shambaugh; Qiang Shi; Richard Shippy; Shengzhu Si; Aaron Smalter; Christos Sotiriou; Mat Soukup; Frank Staedtler; Guido Steiner; Todd H Stokes; Qinglan Sun; Pei-Yi Tan; Rong Tang; Zivana Tezak; Brett Thorn; Marina Tsyganova; Yaron Turpaz; Silvia C Vega; Roberto Visintainer; Juergen von Frese; Charles Wang; Eric Wang; Junwei Wang; Wei Wang; Frank Westermann; James C Willey; Matthew Woods; Shujian Wu; Nianqing Xiao; Joshua Xu; Lei Xu; Lun Yang; Xiao Zeng; Jialu Zhang; Li Zhang; Min Zhang; Chen Zhao; Raj K Puri; Uwe Scherf; Weida Tong; Russell D Wolfinger
Journal:  Nat Biotechnol       Date:  2010-07-30       Impact factor: 54.908

Review 2.  Pharmacogenetics in the evaluation of new drugs: a multiregional regulatory perspective.

Authors:  Marc Maliepaard; Charity Nofziger; Marisa Papaluca; Issam Zineh; Yoshiaki Uyama; Krishna Prasad; Christian Grimstein; Michael Pacanowski; Falk Ehmann; Silvia Dossena; Markus Paulmichl
Journal:  Nat Rev Drug Discov       Date:  2013-02       Impact factor: 84.694

3.  Health regulatory communications of well-established safety-related pharmacogenomics associations in six developed countries: an evaluation of alignment.

Authors:  W C Tan-Koi; Evelyn S H Lim; Y Y Teo
Journal:  Pharmacogenomics J       Date:  2016-02-23       Impact factor: 3.550

4.  Development of a toxicogenomics signature for genotoxicity using a dose-optimization and informatics strategy in human cells.

Authors:  Heng-Hong Li; Daniel R Hyduke; Renxiang Chen; Pamela Heard; Carole L Yauk; Jiri Aubrecht; Albert J Fornace
Journal:  Environ Mol Mutagen       Date:  2015-03-02       Impact factor: 3.216

Review 5.  Radiation metabolomics and its potential in biodosimetry.

Authors:  Stephen L Coy; Amrita K Cheema; John B Tyburski; Evagelia C Laiakis; Sean P Collins; Albert Fornace
Journal:  Int J Radiat Biol       Date:  2011-06-22       Impact factor: 2.694

Review 6.  Comparison of toxicogenomics and traditional approaches to inform mode of action and points of departure in human health risk assessment of benzo[a]pyrene in drinking water.

Authors:  Ivy Moffat; Nikolai Chepelev; Sarah Labib; Julie Bourdon-Lacombe; Byron Kuo; Julie K Buick; France Lemieux; Andrew Williams; Sabina Halappanavar; Amal Malik; Mirjam Luijten; Jiri Aubrecht; Daniel R Hyduke; Albert J Fornace; Carol D Swartz; Leslie Recio; Carole L Yauk
Journal:  Crit Rev Toxicol       Date:  2015-01       Impact factor: 5.635

7.  GADD45 in Stress Signaling, Cell Cycle Control, and Apoptosis.

Authors:  Arslon Humayun; Albert J Fornace
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 2.622

8.  BRIDG: a domain information model for translational and clinical protocol-driven research.

Authors:  Lauren B Becnel; Smita Hastak; Wendy Ver Hoef; Robert P Milius; MaryAnn Slack; Diane Wold; Michael L Glickman; Boris Brodsky; Charles Jaffe; Rebecca Kush; Edward Helton
Journal:  J Am Med Inform Assoc       Date:  2017-09-01       Impact factor: 4.497

9.  204th ENMC International Workshop on Biomarkers in Duchenne Muscular Dystrophy 24-26 January 2014, Naarden, The Netherlands.

Authors:  Alessandra Ferlini; Kevin M Flanigan; Hanns Lochmuller; Francesco Muntoni; Peter A C 't Hoen; Elizabeth McNally
Journal:  Neuromuscul Disord       Date:  2014-09-11       Impact factor: 4.296

10.  Moving forward in human cancer risk assessment.

Authors:  Richard S Paules; Jiri Aubrecht; Raffaella Corvi; Bernward Garthoff; Jos C Kleinjans
Journal:  Environ Health Perspect       Date:  2010-12-13       Impact factor: 9.031

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