Literature DB >> 28339791

BRIDG: a domain information model for translational and clinical protocol-driven research.

Lauren B Becnel1,2, Smita Hastak3, Wendy Ver Hoef3, Robert P Milius4, MaryAnn Slack5, Diane Wold1, Michael L Glickman6, Boris Brodsky5, Charles Jaffe7, Rebecca Kush1, Edward Helton8.   

Abstract

BACKGROUND: It is critical to integrate and analyze data from biological, translational, and clinical studies with data from health systems; however, electronic artifacts are stored in thousands of disparate systems that are often unable to readily exchange data.
OBJECTIVE: To facilitate meaningful data exchange, a model that presents a common understanding of biomedical research concepts and their relationships with health care semantics is required. The Biomedical Research Integrated Domain Group (BRIDG) domain information model fulfills this need. Software systems created from BRIDG have shared meaning "baked in," enabling interoperability among disparate systems. For nearly 10 years, the Clinical Data Standards Interchange Consortium, the National Cancer Institute, the US Food and Drug Administration, and Health Level 7 International have been key stakeholders in developing BRIDG.
METHODS: BRIDG is an open-source Unified Modeling Language-class model developed through use cases and harmonization with other models.
RESULTS: With its 4+ releases, BRIDG includes clinical and now translational research concepts in its Common, Protocol Representation, Study Conduct, Adverse Events, Regulatory, Statistical Analysis, Experiment, Biospecimen, and Molecular Biology subdomains.
INTERPRETATION: The model is a Clinical Data Standards Interchange Consortium, Health Level 7 International, and International Standards Organization standard that has been utilized in national and international standards-based software development projects. It will continue to mature and evolve in the areas of clinical imaging, pathology, ontology, and vocabulary support. BRIDG 4.1.1 and prior releases are freely available at https://bridgmodel.nci.nih.gov .
© The Author 2017. Published by Oxford University Press on behalf of the American Medical Informatics Association. All rights reserved. For Permissions, please email: journals.permissions@oup.com

Entities:  

Keywords:  clinical trials; data modeling; data sharing; pharmacogenetics; translational medical research

Mesh:

Year:  2017        PMID: 28339791      PMCID: PMC6259662          DOI: 10.1093/jamia/ocx004

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  28 in total

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8.  Entrez Gene: gene-centered information at NCBI.

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10.  Genenames.org: the HGNC and VGNC resources in 2017.

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  5 in total

1.  Clinical Concept Value Sets and Interoperability in Health Data Analytics.

Authors:  Sigfried Gold; Andrea Batch; Robert McClure; Guoqian Jiang; Hadi Kharrazi; Rishi Saripalle; Vojtech Huser; Chunhua Weng; Nancy Roderer; Ana Szarfman; Niklas Elmqvist; David Gotz
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Review 2.  Early Detection of Pancreatic Cancer: Applying Artificial Intelligence to Electronic Health Records.

Authors:  Barbara J Kenner; Natalie D Abrams; Suresh T Chari; Bruce F Field; Ann E Goldberg; William A Hoos; David S Klimstra; Laura J Rothschild; Sudhir Srivastava; Matthew R Young; Vay Liang W Go
Journal:  Pancreas       Date:  2021-08-01       Impact factor: 3.243

3.  Use of Clinical Data Interchange Standards Consortium (CDISC) Standards for Real-world Data: Expert Perspectives From a Qualitative Delphi Survey.

Authors:  Rhonda Facile; Erin Elizabeth Muhlbradt; Mengchun Gong; Qingna Li; Vaishali Popat; Frank Pétavy; Ronald Cornet; Yaoping Ruan; Daisuke Koide; Toshiki I Saito; Sam Hume; Frank Rockhold; Wenjun Bao; Sue Dubman; Barbara Jauregui Wurst
Journal:  JMIR Med Inform       Date:  2022-01-27

4.  NCI Imaging Data Commons.

Authors:  Andrey Fedorov; William J R Longabaugh; David Pot; David A Clunie; Steve Pieper; Hugo J W L Aerts; André Homeyer; Rob Lewis; Afshin Akbarzadeh; Dennis Bontempi; William Clifford; Markus D Herrmann; Henning Höfener; Igor Octaviano; Chad Osborne; Suzanne Paquette; James Petts; Davide Punzo; Madelyn Reyes; Daniela P Schacherer; Mi Tian; George White; Erik Ziegler; Ilya Shmulevich; Todd Pihl; Ulrike Wagner; Keyvan Farahani; Ron Kikinis
Journal:  Cancer Res       Date:  2021-06-15       Impact factor: 12.701

5.  Using an artificial neural network to map cancer common data elements to the biomedical research integrated domain group model in a semi-automated manner.

Authors:  Robinette Renner; Shengyu Li; Yulong Huang; Ada Chaeli van der Zijp-Tan; Shaobo Tan; Dongqi Li; Mohan Vamsi Kasukurthi; Ryan Benton; Glen M Borchert; Jingshan Huang; Guoqian Jiang
Journal:  BMC Med Inform Decis Mak       Date:  2019-12-23       Impact factor: 2.796

  5 in total

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