Literature DB >> 29540481

Energetics underlying hemin extraction from human hemoglobin by Staphylococcus aureus.

Megan Sjodt1,2, Ramsay Macdonald1,2, Joanna D Marshall1, Joseph Clayton3, John S Olson4, Martin Phillips1, David A Gell5, Jeff Wereszczynski3, Robert T Clubb6,2,7.   

Abstract

Staphylococcus aureus is a leading cause of life-threatening infections in the United States. It actively acquires the essential nutrient iron from human hemoglobin (Hb) using the iron-regulated surface-determinant (Isd) system. This process is initiated when the closely related bacterial IsdB and IsdH receptors bind to Hb and extract its hemin through a conserved tri-domain unit that contains two NEAr iron Transporter (NEAT) domains that are connected by a helical linker domain. Previously, we demonstrated that the tri-domain unit within IsdH (IsdHN2N3) triggers hemin release by distorting Hb's F-helix. Here, we report that IsdHN2N3 promotes hemin release from both the α- and β-subunits. Using a receptor mutant that only binds to the α-subunit of Hb and a stopped-flow transfer assay, we determined the energetics and micro-rate constants of hemin extraction from tetrameric Hb. We found that at 37 °C, the receptor accelerates hemin release from Hb up to 13,400-fold, with an activation enthalpy of 19.5 ± 1.1 kcal/mol. We propose that hemin removal requires the rate-limiting hydrolytic cleavage of the axial HisF8 Nϵ-Fe3+ bond, which, based on molecular dynamics simulations, may be facilitated by receptor-induced bond hydration. Isothermal titration calorimetry experiments revealed that two distinct IsdHN2N3·Hb protein·protein interfaces promote hemin release. A high-affinity receptor·Hb(A-helix) interface contributed ∼95% of the total binding standard free energy, enabling much weaker receptor interactions with Hb's F-helix that distort its hemin pocket and cause unfavorable changes in the binding enthalpy. We present a model indicating that receptor-introduced structural distortions and increased solvation underlie the IsdH-mediated hemin extraction mechanism.
© 2018 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  IsdB; IsdH; NEAT domain; bacterial pathogenesis; hemoglobin; iron-regulated surface determinant system; isothermal titration calorimetry (ITC); molecular dynamics; receptor; stopped-flow spectrophotometry

Mesh:

Substances:

Year:  2018        PMID: 29540481      PMCID: PMC5936817          DOI: 10.1074/jbc.RA117.000803

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  75 in total

1.  Waterproofing the heme pocket. Role of proximal amino acid side chains in preventing hemin loss from myoglobin.

Authors:  E C Liong; Y Dou; E E Scott; J S Olson; G N Phillips
Journal:  J Biol Chem       Date:  2000-11-17       Impact factor: 5.157

2.  Kinetics of the reconstitution of hemoglobin from semihemoglobins alpha and beta with heme.

Authors:  Y Kawamura-Konishi; K Chiba; H Kihara; H Suzuki
Journal:  Eur Biophys J       Date:  1992       Impact factor: 1.733

Review 3.  Regulation of oxygen affinity of hemoglobin: influence of structure of the globin on the heme iron.

Authors:  M F Perutz
Journal:  Annu Rev Biochem       Date:  1979       Impact factor: 23.643

4.  The PRE-Derived NMR Model of the 38.8-kDa Tri-Domain IsdH Protein from Staphylococcus aureus Suggests That It Adaptively Recognizes Human Hemoglobin.

Authors:  Megan Sjodt; Ramsay Macdonald; Thomas Spirig; Albert H Chan; Claire F Dickson; Marian Fabian; John S Olson; David A Gell; Robert T Clubb
Journal:  J Mol Biol       Date:  2015-02-14       Impact factor: 5.469

5.  Preparation of hemoglobin carbamylated at specific NH2-terminal residues.

Authors:  J M Manning
Journal:  Methods Enzymol       Date:  1981       Impact factor: 1.600

6.  A human recombinant haemoglobin designed for use as a blood substitute.

Authors:  D Looker; D Abbott-Brown; P Cozart; S Durfee; S Hoffman; A J Mathews; J Miller-Roehrich; S Shoemaker; S Trimble; G Fermi
Journal:  Nature       Date:  1992-03-19       Impact factor: 49.962

7.  Aggregation of deoxyhemoglobin subunits.

Authors:  P McGovern; P Reisberg; J S Olson
Journal:  J Biol Chem       Date:  1976-12-25       Impact factor: 5.157

8.  The structure of haemoglobin bound to the haemoglobin receptor IsdH from Staphylococcus aureus shows disruption of the native α-globin haem pocket.

Authors:  Claire F Dickson; David A Jacques; Robert T Clubb; J Mitchell Guss; David A Gell
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-05-14

9.  The kinetic mechanism of heme binding to human apohemoglobin.

Authors:  M Y Rose; J S Olson
Journal:  J Biol Chem       Date:  1983-04-10       Impact factor: 5.157

10.  Non-heme-binding domains and segments of the Staphylococcus aureus IsdB protein critically contribute to the kinetics and equilibrium of heme acquisition from methemoglobin.

Authors:  Hui Zhu; Dengfeng Li; Mengyao Liu; Valerie Copié; Benfang Lei
Journal:  PLoS One       Date:  2014-06-24       Impact factor: 3.240

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  12 in total

1.  The Streptococcus pyogenes Shr protein captures human hemoglobin using two structurally unique binding domains.

Authors:  Ramsay Macdonald; Duilio Cascio; Michael J Collazo; Martin Phillips; Robert T Clubb
Journal:  J Biol Chem       Date:  2018-10-09       Impact factor: 5.157

2.  NMR experiments redefine the hemoglobin binding properties of bacterial NEAr-iron Transporter domains.

Authors:  Ramsay Macdonald; Brendan J Mahoney; Ken Ellis-Guardiola; Anthony Maresso; Robert T Clubb
Journal:  Protein Sci       Date:  2019-07-03       Impact factor: 6.725

3.  The human protein haptoglobin inhibits IsdH-mediated heme-sequestering by Staphylococcus aureus.

Authors:  Jakob H Mikkelsen; Kasper Runager; Christian B F Andersen
Journal:  J Biol Chem       Date:  2019-12-09       Impact factor: 5.157

4.  Atomistic Simulations of Heme Dissociation Pathways in Human Methemoglobins Reveal Hidden Intermediates.

Authors:  Premila P Samuel; David A Case
Journal:  Biochemistry       Date:  2020-10-01       Impact factor: 3.162

5.  Directed Inter-domain Motions Enable the IsdH Staphylococcus aureus Receptor to Rapidly Extract Heme from Human Hemoglobin.

Authors:  Joseph Clayton; Kat Ellis-Guardiola; Brendan J Mahoney; Jess Soule; William Liu; Robert T Clubb; Jeff Wereszczynski
Journal:  J Mol Biol       Date:  2022-05-06       Impact factor: 6.151

6.  The Staphylococcus aureus IsdH Receptor Forms a Dynamic Complex with Human Hemoglobin that Triggers Heme Release via Two Distinct Hot Spots.

Authors:  Ken Ellis-Guardiola; Joseph Clayton; Clarissa Pham; Brendan J Mahoney; Jeff Wereszczynski; Robert T Clubb
Journal:  J Mol Biol       Date:  2019-12-24       Impact factor: 5.469

7.  Methods for the Extraction of Heme Prosthetic Groups from Hemoproteins.

Authors:  Kat Ellis-Guardiola; Jess Soule; Robert T Clubb
Journal:  Bio Protoc       Date:  2021-09-20

8.  Interaction of human hemoglobin and semi-hemoglobins with the Staphylococcus aureus hemophore IsdB: a kinetic and mechanistic insight.

Authors:  Eleonora Gianquinto; Ilaria Moscetti; Omar De Bei; Barbara Campanini; Marialaura Marchetti; F Javier Luque; Salvatore Cannistraro; Luca Ronda; Anna Rita Bizzarri; Francesca Spyrakis; Stefano Bettati
Journal:  Sci Rep       Date:  2019-12-09       Impact factor: 4.379

Review 9.  NEAr Transporter (NEAT) Domains: Unique Surface Displayed Heme Chaperones That Enable Gram-Positive Bacteria to Capture Heme-Iron From Hemoglobin.

Authors:  Ken Ellis-Guardiola; Brendan J Mahoney; Robert T Clubb
Journal:  Front Microbiol       Date:  2021-01-06       Impact factor: 5.640

10.  The Corynebacterium diphtheriae HbpA Hemoglobin-Binding Protein Contains a Domain That Is Critical for Hemoprotein Binding, Cellular Localization, and Function.

Authors:  Lindsey R Lyman; Eric D Peng; Michael P Schmitt
Journal:  J Bacteriol       Date:  2021-08-09       Impact factor: 3.490

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