Literature DB >> 11164045

Consensus temporal order of amino acids and evolution of the triplet code.

E N Trifonov1.   

Abstract

Forty different single-factor criteria and multi-factor hypotheses about chronological order of appearance of amino acids in the early evolution are summarized in consensus ranking. All available knowledge and thoughts about origin and evolution of the genetic code are thus combined in a single list where the amino acids are ranked chronologically. Due to consensus nature of the chronology it has several important properties not visible in individual rankings by any of the initial criteria. Nine amino acids of the Miller's imitation of primordial environment are all ranked as topmost (G, A, V, D, E, P, S, L, T). This result does not change even after several criteria related to Miller's data are excluded from calculations. The consensus order of appearance of the 20 amino acids on the evolutionary scene also reveals a unique and strikingly simple chronological organization of 64 codons, that could not be figured out from individual criteria: New codons appear in descending order of their thermostability, as complementary pairs, with the complements recruited sequentially from the codon repertoires of the earlier or simultaneously appearing amino acids. These three rules (Thermostability, Complementarity and Processivity) hold strictly as well as leading position of the earliest amino acids according to Miller. The consensus chronology of amino acids, G/A, V/D, P, S, E/L, T, R, N, K, Q, I, C, H, F, M, Y, W, and the derived temporal order for codons may serve, thus, as a justified working model of choice for further studies on the origin and evolution of the genetic code.

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Year:  2000        PMID: 11164045     DOI: 10.1016/s0378-1119(00)00476-5

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  92 in total

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Journal:  Orig Life Evol Biosph       Date:  2003-10       Impact factor: 1.950

Review 2.  The case for an error minimizing standard genetic code.

Authors:  Stephen J Freeland; Tao Wu; Nick Keulmann
Journal:  Orig Life Evol Biosph       Date:  2003-10       Impact factor: 1.950

3.  Role of everlasting triplet expansions in protein evolution.

Authors:  Zohar Koren; Edward N Trifonov
Journal:  J Mol Evol       Date:  2010-12-16       Impact factor: 2.395

4.  Amino acid homochirality may be linked to the origin of phosphate-based life.

Authors:  Da Xiong Han; Hai Yan Wang; Zhi Liang Ji; An Fu Hu; Yu Fen Zhao
Journal:  J Mol Evol       Date:  2010-05-27       Impact factor: 2.395

5.  Rational genomics I: antisense open reading frames and codon bias in short-chain oxido reductase enzymes and the evolution of the genetic code.

Authors:  William L Duax; Robert Huether; Vladimir Z Pletnev; David Langs; Anthony Addlagatta; Sonjay Connare; Lukas Habegger; Jay Gill
Journal:  Proteins       Date:  2005-12-01

6.  Conserved sequences of prokaryotic proteomes and their compositional age.

Authors:  Yehoshua Sobolevsky; Edward N Trifonov
Journal:  J Mol Evol       Date:  2005-10-04       Impact factor: 2.395

7.  Primordia vita. Deconvolution from modern sequences.

Authors:  Edward N Trifonov; Idan Gabdank; Danny Barash; Yehoshua Sobolevsky
Journal:  Orig Life Evol Biosph       Date:  2006-12       Impact factor: 1.950

Review 8.  A review of the role of the sequence-dependent electrostatic landscape in DNA alkylation patterns.

Authors:  Barry Gold; Luis M Marky; Michael P Stone; Loren D Williams
Journal:  Chem Res Toxicol       Date:  2006-11       Impact factor: 3.739

9.  Protein modules conserved since LUCA.

Authors:  Yehoshua Sobolevsky; Edward N Trifonov
Journal:  J Mol Evol       Date:  2006-10-29       Impact factor: 2.395

10.  Amino acid exchangeability and the adaptive code hypothesis.

Authors:  Arlin Stoltzfus; Lev Y Yampolsky
Journal:  J Mol Evol       Date:  2007-09-26       Impact factor: 2.395

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