Literature DB >> 20502444

SHEsisEpi, a GPU-enhanced genome-wide SNP-SNP interaction scanning algorithm, efficiently reveals the risk genetic epistasis in bipolar disorder.

Xiaohan Hu, Qiang Liu, Zhao Zhang, Zhiqiang Li, Shilin Wang, Lin He, Yongyong Shi.   

Abstract

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Year:  2010        PMID： 20502444     DOI： 10.1038/cr.2010.68

Source DB:  PubMed          Journal:  Cell Res        ISSN： 1001-0602            Impact factor:   25.617


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  29 in total

1.  EPIBLASTER-fast exhaustive two-locus epistasis detection strategy using graphical processing units.

Authors:  Tony Kam-Thong; Darina Czamara; Koji Tsuda; Karsten Borgwardt; Cathryn M Lewis; Angelika Erhardt-Lehmann; Bernhard Hemmer; Peter Rieckmann; Markus Daake; Frank Weber; Christiane Wolf; Andreas Ziegler; Benno Pütz; Florian Holsboer; Bernhard Schölkopf; Bertram Müller-Myhsok
Journal:  Eur J Hum Genet       Date:  2010-12-08       Impact factor: 4.246

2.  Gene, pathway and network frameworks to identify epistatic interactions of single nucleotide polymorphisms derived from GWAS data.

Authors:  Yu Liu; Sean Maxwell; Tao Feng; Xiaofeng Zhu; Robert C Elston; Mehmet Koyutürk; Mark R Chance
Journal:  BMC Syst Biol       Date:  2012-12-17

3.  Genetic variant representation, annotation and prioritization in the post-GWAS era.

Authors:  Mulin Jun Li; Pak Chung Sham; Junwen Wang
Journal:  Cell Res       Date:  2012-07-17       Impact factor: 25.617

4.  MatrixEpistasis: ultrafast, exhaustive epistasis scan for quantitative traits with covariate adjustment.

Authors:  Shijia Zhu; Gang Fang
Journal:  Bioinformatics       Date:  2018-07-15       Impact factor: 6.937

5.  Combinations of genetic data in a study of oral cancer.

Authors:  Erling Mellerup; Gert Lykke Moeller; Pinaki Mondal; Susanta Roychoudhury
Journal:  Genes Cancer       Date:  2015-09

6.  Interactions of PVT1 and CASC11 on Prostate Cancer Risk in African Americans.

Authors:  Hui-Yi Lin; Catherine Y Callan; Zhide Fang; Heng-Yuan Tung; Jong Y Park
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2019-03-26       Impact factor: 4.254

7.  An examination of single nucleotide polymorphism selection prioritization strategies for tests of gene-gene interaction.

Authors:  Valentina Moskvina; Nick Craddock; Bertram Müller-Myhsok; Tony Kam-Thong; Elaine Green; Peter Holmans; Michael J Owen; Michael C O'Donovan
Journal:  Biol Psychiatry       Date:  2011-04-09       Impact factor: 13.382

8.  A new method for exploring gene-gene and gene-environment interactions in GWAS with tree ensemble methods and SHAP values.

Authors:  Pål V Johnsen; Signe Riemer-Sørensen; Andrew Thomas DeWan; Megan E Cahill; Mette Langaas
Journal:  BMC Bioinformatics       Date:  2021-05-04       Impact factor: 3.169

9.  Ultrafast genome-wide scan for SNP-SNP interactions in common complex disease.

Authors:  Snehit Prabhu; Itsik Pe'er
Journal:  Genome Res       Date:  2012-07-05       Impact factor: 9.043

Review 10.  Detecting epistasis in human complex traits.

Authors:  Wen-Hua Wei; Gibran Hemani; Chris S Haley
Journal:  Nat Rev Genet       Date:  2014-09-09       Impact factor: 53.242
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