Literature DB >> 22801476

Genetic variant representation, annotation and prioritization in the post-GWAS era.

Mulin Jun Li, Pak Chung Sham, Junwen Wang.   

Abstract

Mesh：

Year:  2012        PMID： 22801476      PMCID： PMC3463269          DOI： 10.1038/cr.2012.106

Source DB:  PubMed          Journal:  Cell Res        ISSN： 1001-0602            Impact factor:   25.617


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  13 in total

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Review 2.  Analysing biological pathways in genome-wide association studies.

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4.  GAME: detecting cis-regulatory elements using a genetic algorithm.

Authors:  Zhi Wei; Shane T Jensen
Journal:  Bioinformatics       Date:  2006-04-21       Impact factor: 6.937

5.  Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.

Authors:  Lucia A Hindorff; Praveen Sethupathy; Heather A Junkins; Erin M Ramos; Jayashri P Mehta; Francis S Collins; Teri A Manolio
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-27       Impact factor: 11.205

6.  Circos: an information aesthetic for comparative genomics.

Authors:  Martin Krzywinski; Jacqueline Schein; Inanç Birol; Joseph Connors; Randy Gascoyne; Doug Horsman; Steven J Jones; Marco A Marra
Journal:  Genome Res       Date:  2009-06-18       Impact factor: 9.043

7.  A probabilistic disease-gene finder for personal genomes.

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Journal:  Genome Res       Date:  2011-06-23       Impact factor: 9.043

8.  LocusZoom: regional visualization of genome-wide association scan results.

Authors:  Randall J Pruim; Ryan P Welch; Serena Sanna; Tanya M Teslovich; Peter S Chines; Terry P Gliedt; Michael Boehnke; Gonçalo R Abecasis; Cristen J Willer
Journal:  Bioinformatics       Date:  2010-07-15       Impact factor: 6.937

9.  Integrative genomics viewer.

Authors:  James T Robinson; Helga Thorvaldsdóttir; Wendy Winckler; Mitchell Guttman; Eric S Lander; Gad Getz; Jill P Mesirov
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10.  Next generation sequencing has lower sequence coverage and poorer SNP-detection capability in the regulatory regions.

Authors:  Weixin Wang; Zhi Wei; Tak-Wah Lam; Junwen Wang
Journal:  Sci Rep       Date:  2011-08-05       Impact factor: 4.379
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  18 in total

1.  Diversity and inclusion in genomic research: why the uneven progress?

Authors:  Amy R Bentley; Shawneequa Callier; Charles N Rotimi
Journal:  J Community Genet       Date:  2017-07-18

2.  Association of common variants in the calcium-sensing receptor gene with serum calcium levels in East Asians.

Authors:  Nadimuthu Vinayagamoorthy; Seon-Hee Yim; Seung-Hyun Jung; Sung-Won Park; Young Jin Kim; Bong-Jo Kim; Yeun-Jun Chung
Journal:  J Hum Genet       Date:  2015-05-14       Impact factor: 3.172

Review 3.  Principles and methods of in-silico prioritization of non-coding regulatory variants.

Authors:  Phil H Lee; Christian Lee; Xihao Li; Brian Wee; Tushar Dwivedi; Mark Daly
Journal:  Hum Genet       Date:  2017-12-29       Impact factor: 4.132

4.  mTCTScan: a comprehensive platform for annotation and prioritization of mutations affecting drug sensitivity in cancers.

Authors:  Mulin Jun Li; Hongcheng Yao; Dandan Huang; Huanhuan Liu; Zipeng Liu; Hang Xu; Yiming Qin; Jeanette Prinz; Weiyi Xia; Panwen Wang; Bin Yan; Nhan L Tran; Jean-Pierre Kocher; Pak C Sham; Junwen Wang
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

5.  Association analyses confirm five susceptibility loci for systemic lupus erythematosus in the Han Chinese population.

Authors:  Yu-jun Sheng; Jian-hua Xu; Yong-gui Wu; Xian-bo Zuo; Jin-ping Gao; Yan Lin; Zheng-wei Zhu; Lei-lei Wen; Chao Yang; Lu Liu; Yu-yan Cheng; Yan Chang; Lu-lu Yang; Fu-sheng Zhou; Xian-fa Tang; Xiao-dong Zheng; Xian-yong Yin; Hua-yang Tang; Liang-dan Sun; Yong Cui; Sen Yang; Xue-jun Zhang
Journal:  Arthritis Res Ther       Date:  2015-03-28       Impact factor: 5.156

6.  New variants including ARG1 polymorphisms associated with C-reactive protein levels identified by genome-wide association and pathway analysis.

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7.  Detection of regulatory SNPs in human genome using ChIP-seq ENCODE data.

Authors:  Leonid O Bryzgalov; Elena V Antontseva; Marina Yu Matveeva; Alexander G Shilov; Elena V Kashina; Viatcheslav A Mordvinov; Tatyana I Merkulova
Journal:  PLoS One       Date:  2013-10-29       Impact factor: 3.240

8.  GWAS3D: Detecting human regulatory variants by integrative analysis of genome-wide associations, chromosome interactions and histone modifications.

Authors:  Mulin Jun Li; Lily Yan Wang; Zhengyuan Xia; Pak Chung Sham; Junwen Wang
Journal:  Nucleic Acids Res       Date:  2013-05-30       Impact factor: 16.971

9.  Novel genetic variants in HDAC2 and PPARGC1A of the CREB-binding protein pathway predict survival of non-small-cell lung cancer.

Authors:  Dongfang Tang; Yu Chen Zhao; Danwen Qian; Hongliang Liu; Sheng Luo; Edward F Patz; Patricia G Moorman; Li Su; Sipeng Shen; David C Christiani; Carolyn Glass; Wen Gao; Qingyi Wei
Journal:  Mol Carcinog       Date:  2019-11-12       Impact factor: 5.139

10.  dbPSHP: a database of recent positive selection across human populations.

Authors:  Mulin Jun Li; Lily Yan Wang; Zhengyuan Xia; Maria P Wong; Pak Chung Sham; Junwen Wang
Journal:  Nucleic Acids Res       Date:  2013-11-04       Impact factor: 16.971
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