Literature DB >> 20499895

A stereoelectronic effect in prebiotic nucleotide synthesis.

Amit Choudhary, Kimberli J Kamer, Matthew W Powner, John D Sutherland, Ronald T Raines.   

Abstract

A plausible route for the spontaneous synthesis of an activated ribonucleotide that is poised for polymerization has been put forth (Powner et al. (2009) Nature, 459, 239-242). A key step in this route necessitates the regioselective phosphorylation of the secondary alcohol on C(3') of an anhydroarabinonucleoside in the presence of the primary alcohol on C(5'). Here, we propose that this regioselectivity relies on electron delocalization between a lone pair (n) of O(5') and an antibonding orbital (pi*) of C(2) horizontal lineN(3). This n-->pi* interaction modulates reactivity without the use of a protecting group. Thus, a stereoelectronic effect could have opened a gateway to the "RNA world", the chemical milieu from which the first forms of life are thought to have emerged on Earth some 4 billion years ago.

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Year:  2010        PMID: 20499895      PMCID: PMC2912435          DOI: 10.1021/cb100093g

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  7 in total

1.  RNA-catalyzed RNA polymerization: accurate and general RNA-templated primer extension.

Authors:  W K Johnston; P J Unrau; M S Lawrence; M E Glasner; D P Bartel
Journal:  Science       Date:  2001-05-18       Impact factor: 47.728

2.  Molecular structure of 2,2'-anhydro-1- -D-arabinofuranosyl cytosine hydrochloride (cyclo ara-C): a highly rigid nucleoside.

Authors:  T Brennan; M Sundaralingam
Journal:  Biochem Biophys Res Commun       Date:  1973-06-19       Impact factor: 3.575

3.  The origin of the genetic code.

Authors:  F H Crick
Journal:  J Mol Biol       Date:  1968-12       Impact factor: 5.469

4.  Evolution of the genetic apparatus.

Authors:  L E Orgel
Journal:  J Mol Biol       Date:  1968-12       Impact factor: 5.469

5.  Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions.

Authors:  Matthew W Powner; Béatrice Gerland; John D Sutherland
Journal:  Nature       Date:  2009-05-14       Impact factor: 49.962

6.  Self-sustained replication of an RNA enzyme.

Authors:  Tracey A Lincoln; Gerald F Joyce
Journal:  Science       Date:  2009-01-08       Impact factor: 47.728

7.  Nature of amide carbonyl--carbonyl interactions in proteins.

Authors:  Amit Choudhary; Deepa Gandla; Grant R Krow; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2009-06-03       Impact factor: 15.419

  7 in total
  18 in total

1.  Prebiotic chemistry: a new modus operandi.

Authors:  Matthew W Powner; John D Sutherland
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

2.  A conserved interaction with the chromophore of fluorescent proteins.

Authors:  Amit Choudhary; Kimberli J Kamer; Ronald T Raines
Journal:  Protein Sci       Date:  2011-12-21       Impact factor: 6.725

3.  Intimate interactions with carbonyl groups: dipole-dipole or n→π*?

Authors:  Kimberli J Kamer; Amit Choudhary; Ronald T Raines
Journal:  J Org Chem       Date:  2012-12-10       Impact factor: 4.354

4.  An n→π* interaction in aspirin: implications for structure and reactivity.

Authors:  Amit Choudhary; Kimberli J Kamer; Ronald T Raines
Journal:  J Org Chem       Date:  2011-09-06       Impact factor: 4.354

5.  A key n→π* Interaction in N-acyl homoserine lactones.

Authors:  Robert W Newberry; Ronald T Raines
Journal:  ACS Chem Biol       Date:  2014-02-26       Impact factor: 5.100

6.  Chemoselective multicomponent one-pot assembly of purine precursors in water.

Authors:  Matthew W Powner; John D Sutherland; Jack W Szostak
Journal:  J Am Chem Soc       Date:  2010-11-02       Impact factor: 15.419

7.  n→π* interactions in poly(lactic acid) suggest a role in protein folding.

Authors:  Robert W Newberry; Ronald T Raines
Journal:  Chem Commun (Camb)       Date:  2013-09-11       Impact factor: 6.222

8.  An n→π* interaction reduces the electrophilicity of the acceptor carbonyl group.

Authors:  Amit Choudhary; Charles G Fry; Kimberli J Kamer; Ronald T Raines
Journal:  Chem Commun (Camb)       Date:  2013-09-25       Impact factor: 6.222

9.  n→π* interactions engender chirality in carbonyl groups.

Authors:  Amit Choudhary; Robert W Newberry; Ronald T Raines
Journal:  Org Lett       Date:  2014-06-13       Impact factor: 6.005

10.  n→π* interactions of amides and thioamides: implications for protein stability.

Authors:  Robert W Newberry; Brett VanVeller; Ilia A Guzei; Ronald T Raines
Journal:  J Am Chem Soc       Date:  2013-05-20       Impact factor: 15.419

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