Literature DB >> 19131595

Self-sustained replication of an RNA enzyme.

Tracey A Lincoln1, Gerald F Joyce.   

Abstract

An RNA enzyme that catalyzes the RNA-templated joining of RNA was converted to a format whereby two enzymes catalyze each other's synthesis from a total of four oligonucleotide substrates. These cross-replicating RNA enzymes undergo self-sustained exponential amplification in the absence of proteins or other biological materials. Amplification occurs with a doubling time of about 1 hour and can be continued indefinitely. Populations of various cross-replicating enzymes were constructed and allowed to compete for a common pool of substrates, during which recombinant replicators arose and grew to dominate the population. These replicating RNA enzymes can serve as an experimental model of a genetic system. Many such model systems could be constructed, allowing different selective outcomes to be related to the underlying properties of the genetic system.

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Year:  2009        PMID: 19131595      PMCID: PMC2652413          DOI: 10.1126/science.1167856

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  10 in total

1.  Synthesizing life.

Authors:  J W Szostak; D P Bartel; P L Luisi
Journal:  Nature       Date:  2001-01-18       Impact factor: 49.962

Review 2.  The antiquity of RNA-based evolution.

Authors:  Gerald F Joyce
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

3.  A self-replicating ligase ribozyme.

Authors:  Natasha Paul; Gerald F Joyce
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-18       Impact factor: 11.205

4.  Cross-catalytic replication of an RNA ligase ribozyme.

Authors:  Dong-Eun Kim; Gerald F Joyce
Journal:  Chem Biol       Date:  2004-11

5.  Amplification of an RNA ligase ribozyme under alternating temperature conditions.

Authors:  Ki-Sun Kim; Sangtaek Oh; Sung Su Yea; Moon-Young Yoon; Dong-Eun Kim
Journal:  FEBS Lett       Date:  2008-07-14       Impact factor: 4.124

6.  The origin of the genetic code.

Authors:  F H Crick
Journal:  J Mol Biol       Date:  1968-12       Impact factor: 5.469

7.  The effect of cytidine on the structure and function of an RNA ligase ribozyme.

Authors:  J Rogers; G F Joyce
Journal:  RNA       Date:  2001-03       Impact factor: 4.942

8.  Isolation of new ribozymes from a large pool of random sequences [see comment].

Authors:  D P Bartel; J W Szostak
Journal:  Science       Date:  1993-09-10       Impact factor: 47.728

Review 9.  Directed evolution of nucleic acid enzymes.

Authors:  Gerald F Joyce
Journal:  Annu Rev Biochem       Date:  2004       Impact factor: 23.643

Review 10.  Prebiotic chemistry and the origin of the RNA world.

Authors:  Leslie E Orgel
Journal:  Crit Rev Biochem Mol Biol       Date:  2004 Mar-Apr       Impact factor: 8.250

  10 in total
  188 in total

1.  An active-site guanine participates in glmS ribozyme catalysis in its protonated state.

Authors:  Júlia Viladoms; Lincoln G Scott; Martha J Fedor
Journal:  J Am Chem Soc       Date:  2011-10-20       Impact factor: 15.419

2.  An exit cavity was crucial to the polymerase activity of the early ribosome.

Authors:  George E Fox; Quyen Tran; Ada Yonath
Journal:  Astrobiology       Date:  2011-12-22       Impact factor: 4.335

3.  Self-replication reactions dependent on tertiary interaction motifs in an RNA ligase ribozyme.

Authors:  Rei Ohmori; Hirohide Saito; Yoshiya Ikawa; Yoshihiko Fujita; Tan Inoue
Journal:  J Mol Evol       Date:  2011-11-12       Impact factor: 2.395

4.  Expanding the rule set of DNA circuitry with associative toehold activation.

Authors:  Xi Chen
Journal:  J Am Chem Soc       Date:  2011-12-14       Impact factor: 15.419

5.  Robust self-replication of combinatorial information via crystal growth and scission.

Authors:  Rebecca Schulman; Bernard Yurke; Erik Winfree
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-09       Impact factor: 11.205

6.  Life-changing experiments: The biological Higgs.

Authors:  Heidi Ledford
Journal:  Nature       Date:  2012-03-28       Impact factor: 49.962

Review 7.  Mathematical modeling of evolution. Solved and open problems.

Authors:  Peter Schuster
Journal:  Theory Biosci       Date:  2010-09-01       Impact factor: 1.919

Review 8.  The origins of the RNA world.

Authors:  Michael P Robertson; Gerald F Joyce
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-05-01       Impact factor: 10.005

Review 9.  Getting past the RNA world: the initial Darwinian ancestor.

Authors:  Michael Yarus
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-04-01       Impact factor: 10.005

10.  Kinetic properties of an RNA enzyme that undergoes self-sustained exponential amplification.

Authors:  Antonio C Ferretti; Gerald F Joyce
Journal:  Biochemistry       Date:  2013-02-05       Impact factor: 3.162

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