Literature DB >> 20471950

Ring1B compacts chromatin structure and represses gene expression independent of histone ubiquitination.

Ragnhild Eskeland1, Martin Leeb, Graeme R Grimes, Clémence Kress, Shelagh Boyle, Duncan Sproul, Nick Gilbert, Yuhong Fan, Arthur I Skoultchi, Anton Wutz, Wendy A Bickmore.   

Abstract

How polycomb group proteins repress gene expression in vivo is not known. While histone-modifying activities of the polycomb repressive complexes (PRCs) have been studied extensively, in vitro data have suggested a direct activity of the PRC1 complex in compacting chromatin. Here, we investigate higher-order chromatin compaction of polycomb targets in vivo. We show that PRCs are required to maintain a compact chromatin state at Hox loci in embryonic stem cells (ESCs). There is specific decompaction in the absence of PRC2 or PRC1. This is due to a PRC1-like complex, since decompaction occurs in Ring1B null cells that still have PRC2-mediated H3K27 methylation. Moreover, we show that the ability of Ring1B to restore a compact chromatin state and to repress Hox gene expression is not dependent on its histone ubiquitination activity. We suggest that Ring1B-mediated chromatin compaction acts to directly limit transcription in vivo. Copyright (c) 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20471950      PMCID: PMC3132514          DOI: 10.1016/j.molcel.2010.02.032

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  62 in total

1.  Role of histone H3 lysine 27 methylation in Polycomb-group silencing.

Authors:  Ru Cao; Liangjun Wang; Hengbin Wang; Li Xia; Hediye Erdjument-Bromage; Paul Tempst; Richard S Jones; Yi Zhang
Journal:  Science       Date:  2002-09-26       Impact factor: 47.728

Review 2.  Organizing axes in time and space; 25 years of colinear tinkering.

Authors:  Marie Kmita; Denis Duboule
Journal:  Science       Date:  2003-07-18       Impact factor: 47.728

3.  Estimating genomic distance from DNA sequence location in cell nuclei by a random walk model.

Authors:  G van den Engh; R Sachs; B J Trask
Journal:  Science       Date:  1992-09-04       Impact factor: 47.728

4.  Role of histone H2A ubiquitination in Polycomb silencing.

Authors:  Hengbin Wang; Liangjun Wang; Hediye Erdjument-Bromage; Miguel Vidal; Paul Tempst; Richard S Jones; Yi Zhang
Journal:  Nature       Date:  2004-09-22       Impact factor: 49.962

Review 5.  Polycomb silencing mechanisms and the management of genomic programmes.

Authors:  Yuri B Schwartz; Vincenzo Pirrotta
Journal:  Nat Rev Genet       Date:  2007-01       Impact factor: 53.242

6.  Regional differences in the compaction of chromatin in human G0/G1 interphase nuclei.

Authors:  H Yokota; M J Singer; G J van den Engh; B J Trask
Journal:  Chromosome Res       Date:  1997-05       Impact factor: 5.239

7.  Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells.

Authors:  Julie K Stock; Sara Giadrossi; Miguel Casanova; Emily Brookes; Miguel Vidal; Haruhiko Koseki; Neil Brockdorff; Amanda G Fisher; Ana Pombo
Journal:  Nat Cell Biol       Date:  2007-11-25       Impact factor: 28.824

8.  Ectopic nuclear reorganisation driven by a Hoxb1 transgene transposed into Hoxd.

Authors:  Céline Morey; Nelly R Da Silva; Marie Kmita; Denis Duboule; Wendy A Bickmore
Journal:  J Cell Sci       Date:  2008-02-05       Impact factor: 5.285

9.  Stem cells primed for action: polycomb repressive complexes restrain the expression of lineage-specific regulators in embryonic stem cells.

Authors:  Helle F Jørgensen; Sara Giadrossi; Miguel Casanova; Mitsuhiro Endoh; Haruhiko Koseki; Neil Brockdorff; Amanda G Fisher
Journal:  Cell Cycle       Date:  2006-07-01       Impact factor: 4.534

10.  The expression of murine Hox-2 genes is dependent on the differentiation pathway and displays a collinear sensitivity to retinoic acid in F9 cells and Xenopus embryos.

Authors:  N Papalopulu; R Lovell-Badge; R Krumlauf
Journal:  Nucleic Acids Res       Date:  1991-10-25       Impact factor: 16.971

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  274 in total

1.  Nuclear condensates of the Polycomb protein chromobox 2 (CBX2) assemble through phase separation.

Authors:  Roubina Tatavosian; Samantha Kent; Kyle Brown; Tingting Yao; Huy Nguyen Duc; Thao Ngoc Huynh; Chao Yu Zhen; Brian Ma; Haobin Wang; Xiaojun Ren
Journal:  J Biol Chem       Date:  2018-12-04       Impact factor: 5.157

Review 2.  The roles and regulation of Polycomb complexes in neural development.

Authors:  Matthew Corley; Kristen L Kroll
Journal:  Cell Tissue Res       Date:  2014-11-01       Impact factor: 5.249

3.  A variably occupied CTCF binding site in the ultrabithorax gene in the Drosophila bithorax complex.

Authors:  Jose Paolo Magbanua; Estelle Runneburger; Steven Russell; Robert White
Journal:  Mol Cell Biol       Date:  2014-11-03       Impact factor: 4.272

Review 4.  Functional Crosstalk Between Lysine Methyltransferases on Histone Substrates: The Case of G9A/GLP and Polycomb Repressive Complex 2.

Authors:  Chiara Mozzetta; Julien Pontis; Slimane Ait-Si-Ali
Journal:  Antioxid Redox Signal       Date:  2014-12-19       Impact factor: 8.401

5.  Hox in space: gene cluster regulation linked to folding of chromatin.

Authors:  Alexey V Pindyurin; Bas van Steensel
Journal:  Nucleus       Date:  2012-03-01       Impact factor: 4.197

6.  A new non-catalytic role for ubiquitin ligase RNF8 in unfolding higher-order chromatin structure.

Authors:  Martijn S Luijsterburg; Klara Acs; Leena Ackermann; Wouter W Wiegant; Simon Bekker-Jensen; Dorthe H Larsen; Kum Kum Khanna; Haico van Attikum; Niels Mailand; Nico P Dantuma
Journal:  EMBO J       Date:  2012-04-24       Impact factor: 11.598

7.  Polycomb function during oogenesis is required for mouse embryonic development.

Authors:  Eszter Posfai; Rico Kunzmann; Vincent Brochard; Juliette Salvaing; Erik Cabuy; Tim C Roloff; Zichuan Liu; Mathieu Tardat; Maarten van Lohuizen; Miguel Vidal; Nathalie Beaujean; Antoine H F M Peters
Journal:  Genes Dev       Date:  2012-04-12       Impact factor: 11.361

Review 8.  Charting histone modifications and the functional organization of mammalian genomes.

Authors:  Vicky W Zhou; Alon Goren; Bradley E Bernstein
Journal:  Nat Rev Genet       Date:  2010-11-30       Impact factor: 53.242

9.  Distinct Cellular Assembly Stoichiometry of Polycomb Complexes on Chromatin Revealed by Single-molecule Chromatin Immunoprecipitation Imaging.

Authors:  Roubina Tatavosian; Chao Yu Zhen; Huy Nguyen Duc; Maggie M Balas; Aaron M Johnson; Xiaojun Ren
Journal:  J Biol Chem       Date:  2015-09-17       Impact factor: 5.157

10.  Isolation of chromatin from dysfunctional telomeres reveals an important role for Ring1b in NHEJ-mediated chromosome fusions.

Authors:  Cristina Bartocci; Jolene K Diedrich; Iliana Ouzounov; Julia Li; Andrea Piunti; Diego Pasini; John R Yates; Eros Lazzerini Denchi
Journal:  Cell Rep       Date:  2014-05-09       Impact factor: 9.423

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