Literature DB >> 18252796

Ectopic nuclear reorganisation driven by a Hoxb1 transgene transposed into Hoxd.

Céline Morey1, Nelly R Da Silva, Marie Kmita, Denis Duboule, Wendy A Bickmore.   

Abstract

The extent to which the nuclear organisation of a gene impacts on its ability to be expressed, or whether nuclear organisation merely reflects gene expression states, remains an important but unresolved issue. A model system that has been instrumental in investigating this question utilises the murine Hox gene clusters encoding homeobox-containing proteins. Nuclear reorganisation and chromatin decondensation, initiated towards the 3' end of the clusters, accompanies activation of Hox genes in both differentiation and development, and might be linked to mechanisms underlying colinearity. To investigate this, and to delineate the cis-acting elements involved, here we analyse the nuclear behaviour of a 3' Hoxb1 transgene transposed to the 5' end of the Hoxd cluster. We show that this transgene contains the cis-acting elements sufficient to initiate ectopic local nuclear reorganisation and chromatin decondensation and to break Hoxd colinearity in the primitive streak region of the early embryo. Significantly, in rhombomere 4, the transgene is able to induce attenuated nuclear reorganisation and decondensation of Hoxd even though there is no detectable expression of the transgene at this site. This shows that reorganisation of chromosome territories and chromatin decondensation can be uncoupled from transcription itself and suggests that they can therefore operate upstream of gene expression.

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Year:  2008        PMID: 18252796      PMCID: PMC2258412          DOI: 10.1242/jcs.023234

Source DB:  PubMed          Journal:  J Cell Sci        ISSN: 0021-9533            Impact factor:   5.285


  33 in total

1.  Mechanisms of Hox gene colinearity: transposition of the anterior Hoxb1 gene into the posterior HoxD complex.

Authors:  M Kmita; F van Der Hoeven; J Zákány; R Krumlauf; D Duboule
Journal:  Genes Dev       Date:  2000-01-15       Impact factor: 11.361

2.  Hox cluster polarity in early transcriptional availability: a high order regulatory level of clustered Hox genes in the mouse.

Authors:  Bernard A J Roelen; Wim de Graaff; Sylvie Forlani; Jacqueline Deschamps
Journal:  Mech Dev       Date:  2002-11       Impact factor: 1.882

Review 3.  Organizing axes in time and space; 25 years of colinear tinkering.

Authors:  Marie Kmita; Denis Duboule
Journal:  Science       Date:  2003-07-18       Impact factor: 47.728

4.  Randomly inserted and targeted Hox/reporter fusions transcriptionally silenced in Polycomb mutants.

Authors:  Wim d Graaff; Daihachiro Tomotsune; Tony Oosterveen; Yoshihiro Takihara; Haruhiko Koseki; Jacqueline Deschamps
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-31       Impact factor: 11.205

5.  Serial deletions and duplications suggest a mechanism for the collinearity of Hoxd genes in limbs.

Authors:  Marie Kmita; Nadine Fraudeau; Yann Hérault; Denis Duboule
Journal:  Nature       Date:  2002-11-14       Impact factor: 49.962

6.  A global control region defines a chromosomal regulatory landscape containing the HoxD cluster.

Authors:  François Spitz; Federico Gonzalez; Denis Duboule
Journal:  Cell       Date:  2003-05-02       Impact factor: 41.582

7.  Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription.

Authors:  Séverine Chambeyron; Wendy A Bickmore
Journal:  Genes Dev       Date:  2004-05-15       Impact factor: 11.361

8.  Subchromosomal positioning of the epidermal differentiation complex (EDC) in keratinocyte and lymphoblast interphase nuclei.

Authors:  Ruth R E Williams; Simon Broad; Denise Sheer; Jiannis Ragoussis
Journal:  Exp Cell Res       Date:  2002-01-15       Impact factor: 3.905

9.  P-STAT1 mediates higher-order chromatin remodelling of the human MHC in response to IFNgamma.

Authors:  Rossitza Christova; Tania Jones; Pei-Jun Wu; Andreas Bolzer; Ana P Costa-Pereira; Diane Watling; Ian M Kerr; Denise Sheer
Journal:  J Cell Sci       Date:  2007-08-28       Impact factor: 5.285

10.  Gene density and transcription influence the localization of chromatin outside of chromosome territories detectable by FISH.

Authors:  Nicola L Mahy; Paul E Perry; Wendy A Bickmore
Journal:  J Cell Biol       Date:  2002-12-09       Impact factor: 10.539

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  19 in total

Review 1.  The nuclear envelope as a chromatin organizer.

Authors:  Nikolaj Zuleger; Michael I Robson; Eric C Schirmer
Journal:  Nucleus       Date:  2011-09-01       Impact factor: 4.197

2.  Lack of bystander activation shows that localization exterior to chromosome territories is not sufficient to up-regulate gene expression.

Authors:  Céline Morey; Clémence Kress; Wendy A Bickmore
Journal:  Genome Res       Date:  2009-04-23       Impact factor: 9.043

3.  The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA.

Authors:  Erik Splinter; Elzo de Wit; Elphège P Nora; Petra Klous; Harmen J G van de Werken; Yun Zhu; Lucas J T Kaaij; Wilfred van Ijcken; Joost Gribnau; Edith Heard; Wouter de Laat
Journal:  Genes Dev       Date:  2011-06-20       Impact factor: 11.361

Review 4.  Towards quantitative analysis of gene regulation by enhancers.

Authors:  Ekaterina V Nizovtseva; Stefjord Todolli; Wilma K Olson; Vasily M Studitsky
Journal:  Epigenomics       Date:  2017-08-11       Impact factor: 4.778

Review 5.  Distant activation of transcription: mechanisms of enhancer action.

Authors:  Olga I Kulaeva; Ekaterina V Nizovtseva; Yury S Polikanov; Sergei V Ulianov; Vasily M Studitsky
Journal:  Mol Cell Biol       Date:  2012-10-08       Impact factor: 4.272

Review 6.  Navigating the epigenetic landscape of pluripotent stem cells.

Authors:  Mo Li; Guang-Hui Liu; Juan Carlos Izpisua Belmonte
Journal:  Nat Rev Mol Cell Biol       Date:  2012-07-23       Impact factor: 94.444

7.  CTCF controls HOXA cluster silencing and mediates PRC2-repressive higher-order chromatin structure in NT2/D1 cells.

Authors:  Miao Xu; Guang-Nian Zhao; Xiang Lv; Guoyou Liu; Lily Yan Wang; De-Long Hao; Junwen Wang; De-Pei Liu; Chih-Chuan Liang
Journal:  Mol Cell Biol       Date:  2014-08-18       Impact factor: 4.272

Review 8.  Establishment of Hox vertebral identities in the embryonic spine precursors.

Authors:  Tadahiro Iimura; Nicolas Denans; Olivier Pourquié
Journal:  Curr Top Dev Biol       Date:  2009       Impact factor: 4.897

9.  Reorganization of chromatin is an early response to nitrogen starvation in Schizosaccharomyces pombe.

Authors:  Jenny Alfredsson-Timmins; Carolina Kristell; Frida Henningson; Sara Lyckman; Pernilla Bjerling
Journal:  Chromosoma       Date:  2008-10-21       Impact factor: 4.316

10.  Ring1B compacts chromatin structure and represses gene expression independent of histone ubiquitination.

Authors:  Ragnhild Eskeland; Martin Leeb; Graeme R Grimes; Clémence Kress; Shelagh Boyle; Duncan Sproul; Nick Gilbert; Yuhong Fan; Arthur I Skoultchi; Anton Wutz; Wendy A Bickmore
Journal:  Mol Cell       Date:  2010-05-14       Impact factor: 17.970

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