Literature DB >> 20464388

Oxalate decarboxylase: biotechnological update and prevalence of the enzyme in filamentous fungi.

Miia R Mäkelä1, Kristiina Hildén, Taina K Lundell.   

Abstract

Oxalate decarboxylase (ODC) is a manganese-containing, multimeric enzyme of the cupin protein superfamily. ODC is one of the three enzymes identified to decompose oxalic acid and oxalate, and within ODC catalysis, oxalate is split into formate and CO(2). This primarily intracellular enzyme is found in fungi and bacteria, and currently the best characterized enzyme is the Bacillus subtilis OxdC. Although the physiological role of ODC is yet unidentified, the feasibility of this enzyme in diverse biotechnological applications has been recognized for a long time. ODC could be exploited, e.g., in diagnostics, therapeutics, process industry, and agriculture. So far, the sources of ODC enzyme have been limited including only a few fungal and bacterial species. Thus, there is potential for identification and cloning of new ODC variants with diverse biochemical properties allowing e.g. more enzyme fitness to process applications. This review gives an insight to current knowledge on the biochemical characteristics of ODC, and the relevance of oxalate-converting enzymes in biotechnological applications. Particular emphasis is given to fungal enzymes and the inter-connection of ODC to fungal metabolism of oxalic acid.

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Year:  2010        PMID: 20464388     DOI: 10.1007/s00253-010-2650-z

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   4.813


  18 in total

1.  EPR spin trapping of an oxalate-derived free radical in the oxalate decarboxylase reaction.

Authors:  Witcha Imaram; Benjamin T Saylor; Christopher P Centonze; Nigel G J Richards; Alexander Angerhofer
Journal:  Free Radic Biol Med       Date:  2011-01-26       Impact factor: 7.376

2.  Polyporales Brown Rot Species Fomitopsis pinicola: Enzyme Activity Profiles, Oxalic Acid Production, and Fe3+-Reducing Metabolite Secretion.

Authors:  Firoz Shah; Tuulia Mali; Taina K Lundell
Journal:  Appl Environ Microbiol       Date:  2018-04-02       Impact factor: 4.792

3.  Observation of superoxide production during catalysis of Bacillus subtilis oxalate decarboxylase at pH 4.

Authors:  Umar T Twahir; Corey N Stedwell; Cory T Lee; Nigel G J Richards; Nicolas C Polfer; Alexander Angerhofer
Journal:  Free Radic Biol Med       Date:  2014-12-16       Impact factor: 7.376

4.  Oxalate efflux transporter from the brown rot fungus Fomitopsis palustris.

Authors:  Tomoki Watanabe; Nobukazu Shitan; Shiro Suzuki; Toshiaki Umezawa; Mikio Shimada; Kazufumi Yazaki; Takefumi Hattori
Journal:  Appl Environ Microbiol       Date:  2010-10-01       Impact factor: 4.792

5.  Fungal variegatic acid and extracellular polysaccharides promote the site-specific generation of reactive oxygen species.

Authors:  Yuan Zhu; James Mahaney; Jody Jellison; Jinzhen Cao; Julia Gressler; Dirk Hoffmeister; Barry Goodell
Journal:  J Ind Microbiol Biotechnol       Date:  2016-12-29       Impact factor: 3.346

Review 6.  Metabolic engineering of carbon and redox flow in the production of small organic acids.

Authors:  Chandresh Thakker; Irene Martínez; Wei Li; Ka-Yiu San; George N Bennett
Journal:  J Ind Microbiol Biotechnol       Date:  2014-12-13       Impact factor: 3.346

7.  Physiological mechanisms by which gypsum increases the growth and yield of Lentinula edodes.

Authors:  Jintao Li; Yingce Duan; Ziyi Hu; Fan Yang; Xiangli Wu; Ruiying Zhang
Journal:  Appl Microbiol Biotechnol       Date:  2022-03-26       Impact factor: 4.813

8.  The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown-rot mechanism involving Fenton chemistry.

Authors:  Francois Rineau; Doris Roth; Firoz Shah; Mark Smits; Tomas Johansson; Björn Canbäck; Peter Bjarke Olsen; Per Persson; Morten Nedergaard Grell; Erika Lindquist; Igor V Grigoriev; Lene Lange; Anders Tunlid
Journal:  Environ Microbiol       Date:  2012-03-30       Impact factor: 5.491

9.  Oxalate-metabolising genes of the white-rot fungus Dichomitus squalens are differentially induced on wood and at high proton concentration.

Authors:  Miia R Mäkelä; Outi-Maaria Sietiö; Ronald P de Vries; Sari Timonen; Kristiina Hildén
Journal:  PLoS One       Date:  2014-02-05       Impact factor: 3.240

Review 10.  Mechanisms of metal-dependent non-redox decarboxylases from quantum chemical calculations.

Authors:  Xiang Sheng; Fahmi Himo
Journal:  Comput Struct Biotechnol J       Date:  2021-05-26       Impact factor: 7.271

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