Literature DB >> 29439983

Polyporales Brown Rot Species Fomitopsis pinicola: Enzyme Activity Profiles, Oxalic Acid Production, and Fe3+-Reducing Metabolite Secretion.

Firoz Shah1, Tuulia Mali1, Taina K Lundell2.   

Abstract

Basidiomycota fungi in the order Polyporales are specified to decomposition of dead wood and woody debris and thereby are crucial players in the degradation of organic matter and cycling of carbon in the forest ecosystems. Polyporales wood-decaying species comprise both white rot and brown rot fungi, based on their mode of wood decay. While the white rot fungi are able to attack and decompose all the lignocellulose biopolymers, the brown rot species mainly cause the destruction of wood polysaccharides, with minor modification of the lignin units. The biochemical mechanism of brown rot decay of wood is still unclear and has been proposed to include a combination of nonenzymatic oxidation reactions and carbohydrate-active enzymes. Therefore, a linking approach is needed to dissect the fungal brown rot processes. We studied the brown rot Polyporales species Fomitopsis pinicola by following mycelial growth and enzyme activity patterns and generating metabolites together with Fenton-promoting Fe3+-reducing activity for 3 months in submerged cultures supplemented with spruce wood. Enzyme activities to degrade hemicellulose, cellulose, proteins, and chitin were produced by three Finnish isolates of F. pinicola Substantial secretion of oxalic acid and a decrease in pH were notable. Aromatic compounds and metabolites were observed to accumulate in the fungal cultures, with some metabolites having Fe3+-reducing activity. Thus, F. pinicola demonstrates a pattern of strong mycelial growth leading to the active production of carbohydrate- and protein-active enzymes, together with the promotion of Fenton biochemistry. Our findings point to fungal species-level "fine-tuning" and variations in the biochemical reactions leading to the brown rot type of wood decay.IMPORTANCEFomitopsis pinicola is a common fungal species in boreal and temperate forests in the Northern Hemisphere encountered as a wood-colonizing saprotroph and tree pathogen, causing a severe brown rot type of wood degradation. However, its lignocellulose-decomposing mechanisms have remained undiscovered. Our approach was to explore both the enzymatic activities and nonenzymatic Fenton reaction-promoting activities (Fe3+ reduction and metabolite production) by cultivating three isolates of F. pinicola in wood-supplemented cultures. Our findings on the simultaneous production of versatile enzyme activities, including those of endoglucanase, xylanase, β-glucosidase, chitinase, and acid peptidase, together with generation of low pH, accumulation of oxalic acid, and Fe3+-reducing metabolites, increase the variations of fungal brown rot decay mechanisms. Furthermore, these findings will aid us in revealing the wood decay proteomic, transcriptomic, and metabolic activities of this ecologically important forest fungal species.
Copyright © 2018 American Society for Microbiology.

Entities:  

Keywords:  Agaricomycetes; Fenton reaction; Polyporales; basidiomycetes; biodegradation; brown rot; fungal enzymes; lignocellulose; oxalic acid; wood decay fungi

Mesh:

Substances:

Year:  2018        PMID: 29439983      PMCID: PMC5881074          DOI: 10.1128/AEM.02662-17

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  24 in total

1.  Population structure of the wood decay fungus Fomitopsis pinicola.

Authors:  N Högberg; O Holdenrieder; J Stenlid
Journal:  Heredity (Edinb)       Date:  1999-09       Impact factor: 3.821

Review 2.  Peculiarities of brown-rot fungi and biochemical Fenton reaction with regard to their potential as a model for bioprocessing biomass.

Authors:  Valdeir Arantes; Jody Jellison; Barry Goodell
Journal:  Appl Microbiol Biotechnol       Date:  2012-03-06       Impact factor: 4.813

3.  Transcriptional analysis of selected cellulose-acting enzymes encoding genes of the white-rot fungus Dichomitus squalens on spruce wood and microcrystalline cellulose.

Authors:  Johanna Rytioja; Kristiina Hildén; Annele Hatakka; Miia R Mäkelä
Journal:  Fungal Genet Biol       Date:  2014-01-03       Impact factor: 3.495

4.  The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi.

Authors:  Daniel C Eastwood; Dimitrios Floudas; Manfred Binder; Andrzej Majcherczyk; Patrick Schneider; Andrea Aerts; Fred O Asiegbu; Scott E Baker; Kerrie Barry; Mika Bendiksby; Melanie Blumentritt; Pedro M Coutinho; Dan Cullen; Ronald P de Vries; Allen Gathman; Barry Goodell; Bernard Henrissat; Katarina Ihrmark; Hävard Kauserud; Annegret Kohler; Kurt LaButti; Alla Lapidus; José L Lavin; Yong-Hwan Lee; Erika Lindquist; Walt Lilly; Susan Lucas; Emmanuelle Morin; Claude Murat; José A Oguiza; Jongsun Park; Antonio G Pisabarro; Robert Riley; Anna Rosling; Asaf Salamov; Olaf Schmidt; Jeremy Schmutz; Inger Skrede; Jan Stenlid; Ad Wiebenga; Xinfeng Xie; Ursula Kües; David S Hibbett; Dirk Hoffmeister; Nils Högberg; Francis Martin; Igor V Grigoriev; Sarah C Watkinson
Journal:  Science       Date:  2011-07-14       Impact factor: 47.728

5.  Lignin-degrading peroxidases in Polyporales: an evolutionary survey based on 10 sequenced genomes.

Authors:  Francisco J Ruiz-Dueñas; Taina Lundell; Dimitrios Floudas; Laszlo G Nagy; José M Barrasa; David S Hibbett; Angel T Martínez
Journal:  Mycologia       Date:  2013-08-06       Impact factor: 2.696

6.  Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion.

Authors:  Diego Martinez; Jean Challacombe; Ingo Morgenstern; David Hibbett; Monika Schmoll; Christian P Kubicek; Patricia Ferreira; Francisco J Ruiz-Duenas; Angel T Martinez; Phil Kersten; Kenneth E Hammel; Amber Vanden Wymelenberg; Jill Gaskell; Erika Lindquist; Grzegorz Sabat; Sandra Splinter Bondurant; Luis F Larrondo; Paulo Canessa; Rafael Vicuna; Jagjit Yadav; Harshavardhan Doddapaneni; Venkataramanan Subramanian; Antonio G Pisabarro; José L Lavín; José A Oguiza; Emma Master; Bernard Henrissat; Pedro M Coutinho; Paul Harris; Jon Karl Magnuson; Scott E Baker; Kenneth Bruno; William Kenealy; Patrik J Hoegger; Ursula Kües; Preethi Ramaiya; Susan Lucas; Asaf Salamov; Harris Shapiro; Hank Tu; Christine L Chee; Monica Misra; Gary Xie; Sarah Teter; Debbie Yaver; Tim James; Martin Mokrejs; Martin Pospisek; Igor V Grigoriev; Thomas Brettin; Dan Rokhsar; Randy Berka; Dan Cullen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-04       Impact factor: 11.205

7.  The molecular components of the extracellular protein-degradation pathways of the ectomycorrhizal fungus Paxillus involutus.

Authors:  Firoz Shah; Francois Rineau; Björn Canbäck; Tomas Johansson; Anders Tunlid
Journal:  New Phytol       Date:  2013-07-31       Impact factor: 10.151

8.  Involutin is an Fe3+ reductant secreted by the ectomycorrhizal fungus Paxillus involutus during Fenton-based decomposition of organic matter.

Authors:  Firoz Shah; Daniel Schwenk; César Nicolás; Per Persson; Dirk Hoffmeister; Anders Tunlid
Journal:  Appl Environ Microbiol       Date:  2015-10-02       Impact factor: 4.792

9.  Lignocellulose-converting enzyme activity profiles correlate with molecular systematics and phylogeny grouping in the incoherent genus Phlebia (Polyporales, Basidiomycota).

Authors:  Jaana Kuuskeri; Miia R Mäkelä; Jarkko Isotalo; Ilona Oksanen; Taina Lundell
Journal:  BMC Microbiol       Date:  2015-10-19       Impact factor: 3.605

10.  Interactions affect hyphal growth and enzyme profiles in combinations of coniferous wood-decaying fungi of Agaricomycetes.

Authors:  Tuulia Mali; Jaana Kuuskeri; Firoz Shah; Taina Kristina Lundell
Journal:  PLoS One       Date:  2017-09-27       Impact factor: 3.240

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  8 in total

1.  Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola.

Authors:  Baojun Wu; Jill Gaskell; Benjamin W Held; Cristina Toapanta; Thu Vuong; Steven Ahrendt; Anna Lipzen; Jiwei Zhang; Jonathan S Schilling; Emma Master; Igor V Grigoriev; Robert A Blanchette; Dan Cullen; David S Hibbett
Journal:  Appl Environ Microbiol       Date:  2018-08-01       Impact factor: 4.792

2.  Exposure to UV-B Radiation Leads to Increased Deposition of Cell Wall-Associated Xerocomic Acid in Cultures of Serpula himantioides.

Authors:  Solange Torres; Mariela González-Ramírez; Javiera Gavilán; Cristian Paz; Goetz Palfner; Norbert Arnold; Jorge Fuentealba; José Becerra; Claudia Pérez; Jaime R Cabrera-Pardo
Journal:  Appl Environ Microbiol       Date:  2019-08-29       Impact factor: 4.792

3.  Retracted and Republished from: "Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola"

Authors:  Baojun Wu; Jill Gaskell; Benjamin W Held; Cristina Toapanta; Thu V Vuong; Steven Ahrendt; Anna Lipzen; Jiwei Zhang; Jonathan S Schilling; Emma Master; Igor V Grigoriev; Robert A Blanchette; Dan Cullen; David S Hibbett
Journal:  Appl Environ Microbiol       Date:  2021-07-27       Impact factor: 4.792

4.  Multi-omics analysis provides insights into lignocellulosic biomass degradation by Laetiporus sulphureus ATCC 52600.

Authors:  Fernanda Lopes de Figueiredo; Ana Carolina Piva de Oliveira; Cesar Rafael Fanchini Terrasan; Thiago Augusto Gonçalves; Jaqueline Aline Gerhardt; Geizecler Tomazetto; Gabriela Felix Persinoti; Marcelo Ventura Rubio; Jennifer Andrea Tamayo Peña; Michelle Fernandes Araújo; Maria Augusta de Carvalho Silvello; Telma Teixeira Franco; Sarita Cândida Rabelo; Rosana Goldbeck; Fabio Marcio Squina; André Damasio
Journal:  Biotechnol Biofuels       Date:  2021-04-17       Impact factor: 6.040

5.  Fomitopsis meliae CFA 2, a novel brown rot for endoglucanase: emphasis towards enhanced endoglucanase production by statistical approach.

Authors:  Amisha Patel; Jyoti Divecha; Amita Shah
Journal:  Mycology       Date:  2021-04-30

6.  Excessive Oxalic Acid Secreted by Sparassis latifolia Inhibits the Growth of Mycelia during Its Saprophytic Process.

Authors:  Lili Shu; Miaoyue Wang; Shuang Wang; Yu Li; Hui Xu; Zhiheng Qiu; Tianlai Li
Journal:  Cells       Date:  2022-08-05       Impact factor: 7.666

7.  Decomposition of spruce wood and release of volatile organic compounds depend on decay type, fungal interactions and enzyme production patterns.

Authors:  Tuulia Mali; Mari Mäki; Heidi Hellén; Jussi Heinonsalo; Jaana Bäck; Taina Lundell
Journal:  FEMS Microbiol Ecol       Date:  2019-09-01       Impact factor: 4.194

8.  Enzyme Activity Profiles Produced on Wood and Straw by Four Fungi of Different Decay Strategies.

Authors:  Eliana Veloz Villavicencio; Tuulia Mali; Hans K Mattila; Taina Lundell
Journal:  Microorganisms       Date:  2020-01-02
  8 in total

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