Literature DB >> 25502283

Metabolic engineering of carbon and redox flow in the production of small organic acids.

Chandresh Thakker1, Irene Martínez, Wei Li, Ka-Yiu San, George N Bennett.   

Abstract

The review describes efforts toward metabolic engineering of production of organic acids. One aspect of the strategy involves the generation of an appropriate amount and type of reduced cofactor needed for the designed pathway. The ability to capture reducing power in the proper form, NADH or NADPH for the biosynthetic reactions leading to the organic acid, requires specific attention in designing the host and also depends on the feedstock used and cell energetic requirements for efficient metabolism during production. Recent work on the formation and commercial uses of a number of small mono- and diacids is discussed with redox differences, major biosynthetic precursors and engineering strategies outlined. Specific attention is given to those acids that are used in balancing cell redox or providing reduction equivalents for the cell, such as formate, which can be used in conjunction with metabolic engineering of other products to improve yields. Since a number of widely studied acids derived from oxaloacetate as an important precursor, several of these acids are covered with the general strategies and particular components summarized, including succinate, fumarate and malate. Since malate and fumarate are less reduced than succinate, the availability of reduction equivalents and level of aerobiosis are important parameters in optimizing production of these compounds in various hosts. Several other more oxidized acids are also discussed as in some cases, they may be desired products or their formation is minimized to afford higher yields of more reduced products. The placement and connections among acids in the typical central metabolic network are presented along with the use of a number of specific non-native enzymes to enhance routes to high production, where available alternative pathways and strategies are discussed. While many organic acids are derived from a few precursors within central metabolism, each organic acid has its own special requirements for high production and best compatibility with host physiology.

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Year:  2014        PMID: 25502283     DOI: 10.1007/s10295-014-1560-y

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  225 in total

1.  Unprecedented acetoacetyl-coenzyme A synthesizing enzyme of the thiolase superfamily involved in the mevalonate pathway.

Authors:  Eiji Okamura; Takeo Tomita; Ryuichi Sawa; Makoto Nishiyama; Tomohisa Kuzuyama
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-07       Impact factor: 11.205

2.  Efficient free fatty acid production in Escherichia coli using plant acyl-ACP thioesterases.

Authors:  Xiujun Zhang; Mai Li; Arpita Agrawal; Ka-Yiu San
Journal:  Metab Eng       Date:  2011-10-06       Impact factor: 9.783

3.  Altered Electron Flow in Continuous Cultures of Clostridium acetobutylicum Induced by Viologen Dyes.

Authors:  G Rao; R Mutharasan
Journal:  Appl Environ Microbiol       Date:  1987-06       Impact factor: 4.792

Review 4.  Metabolic engineering of fatty acid biosynthesis in plants.

Authors:  Jay J Thelen; John B Ohlrogge
Journal:  Metab Eng       Date:  2002-01       Impact factor: 9.783

Review 5.  16 years research on lactic acid production with yeast - ready for the market?

Authors:  Michael Sauer; Danilo Porro; Diethard Mattanovich; Paola Branduardi
Journal:  Biotechnol Genet Eng Rev       Date:  2010

6.  Fumaric acid production in Saccharomyces cerevisiae by simultaneous use of oxidative and reductive routes.

Authors:  Guoqiang Xu; Xiulai Chen; Liming Liu; Linghuo Jiang
Journal:  Bioresour Technol       Date:  2013-08-26       Impact factor: 9.642

7.  Production of succinic acid by engineered E. coli strains using soybean carbohydrates as feedstock under aerobic fermentation conditions.

Authors:  Chandresh Thakker; Ka-Yiu San; George N Bennett
Journal:  Bioresour Technol       Date:  2012-11-07       Impact factor: 9.642

Review 8.  Malonate metabolism: biochemistry, molecular biology, physiology, and industrial application.

Authors:  Yu Sam Kim
Journal:  J Biochem Mol Biol       Date:  2002-09-30

9.  Reconstruction of cytosolic fumaric acid biosynthetic pathways in Saccharomyces cerevisiae.

Authors:  Guoqiang Xu; Liming Liu; Jian Chen
Journal:  Microb Cell Fact       Date:  2012-02-15       Impact factor: 5.328

10.  Biochemistry of microbial itaconic acid production.

Authors:  Matthias G Steiger; Marzena L Blumhoff; Diethard Mattanovich; Michael Sauer
Journal:  Front Microbiol       Date:  2013-02-14       Impact factor: 5.640

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  14 in total

1.  5-Aminolevulinic acid production from inexpensive glucose by engineering the C4 pathway in Escherichia coli.

Authors:  Wenwen Ding; Huanjiao Weng; Guocheng Du; Jian Chen; Zhen Kang
Journal:  J Ind Microbiol Biotechnol       Date:  2017-04-05       Impact factor: 3.346

2.  High yield production of four-carbon dicarboxylic acids by metabolically engineered Escherichia coli.

Authors:  Irene Martinez; Haijun Gao; George N Bennett; Ka-Yiu San
Journal:  J Ind Microbiol Biotechnol       Date:  2017-12-01       Impact factor: 3.346

Review 3.  Microbial Production of Short Chain Fatty Acids from Lignocellulosic Biomass: Current Processes and Market.

Authors:  Ivan Baumann; Peter Westermann
Journal:  Biomed Res Int       Date:  2016-07-31       Impact factor: 3.411

Review 4.  Designed for life: biocompatible de novo designed proteins and components.

Authors:  Katie J Grayson; J L Ross Anderson
Journal:  J R Soc Interface       Date:  2018-08       Impact factor: 4.118

5.  Engineering energetically efficient transport of dicarboxylic acids in yeast Saccharomyces cerevisiae.

Authors:  Behrooz Darbani; Vratislav Stovicek; Steven Axel van der Hoek; Irina Borodina
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-29       Impact factor: 11.205

6.  Biodiesel-Derived Glycerol Obtained from Renewable Biomass-A Suitable Substrate for the Growth of Candida zeylanoides Yeast Strain ATCC 20367.

Authors:  Laura Mitrea; Floricuța Ranga; Florinela Fetea; Francisc Vasile Dulf; Alexandru Rusu; Monica Trif; Dan Cristian Vodnar
Journal:  Microorganisms       Date:  2019-08-16

7.  Biochemical characterisation of fumarase C from a unicellular cyanobacterium demonstrating its substrate affinity, altered by an amino acid substitution.

Authors:  Noriaki Katayama; Masahiro Takeya; Takashi Osanai
Journal:  Sci Rep       Date:  2019-07-23       Impact factor: 4.379

Review 8.  Production of valuable compounds by molds and yeasts.

Authors:  Arnold L Demain; Evan Martens
Journal:  J Antibiot (Tokyo)       Date:  2016-10-12       Impact factor: 2.649

Review 9.  Inducible promoters and functional genomic approaches for the genetic engineering of filamentous fungi.

Authors:  Janina Kluge; Dominik Terfehr; Ulrich Kück
Journal:  Appl Microbiol Biotechnol       Date:  2018-06-02       Impact factor: 4.813

Review 10.  Transcription Factor Engineering for High-Throughput Strain Evolution and Organic Acid Bioproduction: A Review.

Authors:  Jia-Wei Li; Xiao-Yan Zhang; Hui Wu; Yun-Peng Bai
Journal:  Front Bioeng Biotechnol       Date:  2020-02-19
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