Literature DB >> 29544886

Evolutionary advantage of directional symmetry breaking in self-replicating polymers.

Hemachander Subramanian1, Robert A Gatenby2.   

Abstract

Due to the asymmetric nature of the nucleotides, the extant informational biomolecule, DNA, is constrained to replicate unidirectionally on a template. As a product of molecular evolution that sought to maximize replicative potential, DNA's unidirectional replication poses a mystery since symmetric bidirectional self-replicators obviously would replicate faster than unidirectional self-replicators and hence would have been evolutionarily more successful. Here we carefully examine the physico-chemical requirements for evolutionarily successful primordial self-replicators and theoretically show that at low monomer concentrations that possibly prevailed in the primordial oceans, asymmetric unidirectional self-replicators would have an evolutionary advantage over bidirectional self-replicators. The competing requirements of low and high kinetic barriers for formation and long lifetime of inter-strand bonds respectively are simultaneously satisfied through asymmetric kinetic influence of inter-strand bonds, resulting in evolutionarily successful unidirectional self-replicators. Within our model, circular strands, the configuration prefered by primitive life forms, have higher replicative potential compared to linear strands.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  3’-5’ unidirectional replication; Asymmetric cooperativity; DNA strand directionality; Primordial heteropolymers

Mesh:

Substances:

Year:  2018        PMID: 29544886      PMCID: PMC5891365          DOI: 10.1016/j.jtbi.2018.03.012

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  27 in total

1.  The contributions of replication orientation, gene direction, and signal sequences to base-composition asymmetries in bacterial genomes.

Authors:  E R Tillier; R A Collins
Journal:  J Mol Evol       Date:  2000-03       Impact factor: 2.395

2.  Discrimination among individual Watson-Crick base pairs at the termini of single DNA hairpin molecules.

Authors:  Wenonah A Vercoutere; Stephen Winters-Hilt; Veronica S DeGuzman; David Deamer; Sam E Ridino; Joseph T Rodgers; Hugh E Olsen; Andre Marziali; Mark Akeson
Journal:  Nucleic Acids Res       Date:  2003-02-15       Impact factor: 16.971

3.  The thermodynamics of template-directed DNA synthesis: base insertion and extension enthalpies.

Authors:  Conceição A S A Minetti; David P Remeta; Holly Miller; Craig A Gelfand; G Eric Plum; Arthur P Grollman; Kenneth J Breslauer
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-17       Impact factor: 11.205

Review 4.  The replication-related organization of bacterial genomes.

Authors:  Eduardo P C Rocha
Journal:  Microbiology       Date:  2004-06       Impact factor: 2.777

5.  More is different.

Authors:  P W Anderson
Journal:  Science       Date:  1972-08-04       Impact factor: 47.728

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Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1993-01

7.  Sequence-dependent unfolding kinetics of DNA hairpins studied by nanopore force spectroscopy.

Authors:  Stephan Renner; Andrey Bessonov; Ulrich Gerland; Friedrich C Simmel
Journal:  J Phys Condens Matter       Date:  2010-10-29       Impact factor: 2.333

8.  A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics.

Authors:  J SantaLucia
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-17       Impact factor: 11.205

9.  The case for an ancestral genetic system involving simple analogues of the nucleotides.

Authors:  G F Joyce; A W Schwartz; S L Miller; L E Orgel
Journal:  Proc Natl Acad Sci U S A       Date:  1987-07       Impact factor: 11.205

10.  Unzipping kinetics of duplex DNA containing oxidized lesions in an α-hemolysin nanopore.

Authors:  Qian Jin; Aaron M Fleming; Cynthia J Burrows; Henry S White
Journal:  J Am Chem Soc       Date:  2012-06-25       Impact factor: 15.419

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  3 in total

1.  Chiral Monomers Ensure Orientational Specificity of Monomer Binding During Polymer Self-Replication.

Authors:  Hemachander Subramanian; Robert A Gatenby
Journal:  J Mol Evol       Date:  2018-05-03       Impact factor: 2.395

2.  Evolutionary advantage of anti-parallel strand orientation of duplex DNA.

Authors:  Hemachander Subramanian; Robert A Gatenby
Journal:  Sci Rep       Date:  2020-06-18       Impact factor: 4.379

3.  Prebiotic competition and evolution in self-replicating polynucleotides can explain the properties of DNA/RNA in modern living systems.

Authors:  Hemachander Subramanian; Joel Brown; Robert Gatenby
Journal:  BMC Evol Biol       Date:  2020-06-26       Impact factor: 3.436

  3 in total

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