Literature DB >> 20462697

Fully three-dimensional defocus-gradient corrected backprojection in cryoelectron microscopy.

Ivan G Kazantsev1, Joanna Klukowska, Gabor T Herman, Laslo Cernetic.   

Abstract

Recognizing that the microscope depth of field is a significant resolution-limiting factor in 3D cryoelectron microscopy, Jensen and Kornberg proposed a concept they called defocus-gradient corrected backprojection (DGCBP) and illustrated by computer simulations that DGCBP can effectively eliminate the depth of field limitation. They did not provide a mathematical justification for their concept. Our paper provides this, by showing (in the idealized case of noiseless data being available for all projection directions) that the reconstructions obtained based on DGCBP from data produced with distance-dependent blurring are essentially the same as what is obtained by a classical method of reconstruction of a 3D object from its line integrals. The approach is general enough to be applicable for correcting for any distance-dependent blurring during projection data collection. We present a new implementation of the DGCBP concept, one that closely follows the mathematics of its justifications, and illustrate it using mathematically described phantoms and their reconstructions from finitely many distance-dependently blurred projections. 2010 Elsevier B.V. All rights reserved.

Entities:  

Year:  2010        PMID: 20462697      PMCID: PMC2912958          DOI: 10.1016/j.ultramic.2010.04.002

Source DB:  PubMed          Journal:  Ultramicroscopy        ISSN: 0304-3991            Impact factor:   2.689


  7 in total

1.  Defocus-gradient corrected back-projection.

Authors:  G J Jensen; R D Kornberg
Journal:  Ultramicroscopy       Date:  2000-07       Impact factor: 2.689

2.  Correction of high-resolution data for curvature of the Ewald sphere.

Authors:  D J DeRosier
Journal:  Ultramicroscopy       Date:  2000-03       Impact factor: 2.689

3.  Ewald sphere correction for single-particle electron microscopy.

Authors:  Matthias Wolf; David J DeRosier; Nikolaus Grigorieff
Journal:  Ultramicroscopy       Date:  2005-12-09       Impact factor: 2.689

4.  Fourier correction for spatially variant collimator blurring in SPECT.

Authors:  W Xia; R M Lewitt; P R Edholm
Journal:  IEEE Trans Med Imaging       Date:  1995       Impact factor: 10.048

5.  Exact and approximate rebinning algorithms for 3-D PET data.

Authors:  M Defrise; P E Kinahan; D W Townsend; C Michel; M Sibomana; D F Newport
Journal:  IEEE Trans Med Imaging       Date:  1997-04       Impact factor: 10.048

6.  Estimates of validity of projection approximation for three-dimensional reconstructions at high resolution.

Authors:  H A Cohen; M F Schmid; W Chiu
Journal:  Ultramicroscopy       Date:  1984       Impact factor: 2.689

7.  Determination of signal-to-noise ratios and spectral SNRs in cryo-EM low-dose imaging of molecules.

Authors:  William T Baxter; Robert A Grassucci; Haixiao Gao; Joachim Frank
Journal:  J Struct Biol       Date:  2009-03-06       Impact factor: 2.867

  7 in total
  8 in total

1.  Characterization of transfer function, resolution and depth of field of a soft X-ray microscope applied to tomography enhancement by Wiener deconvolution.

Authors:  Joaquín Otón; Eva Pereiro; Ana J Pérez-Berná; Laia Millach; Carlos Oscar S Sorzano; Roberto Marabini; José M Carazo
Journal:  Biomed Opt Express       Date:  2016-11-14       Impact factor: 3.732

2.  Electron tomography simulator with realistic 3D phantom for evaluation of acquisition, alignment and reconstruction methods.

Authors:  Xiaohua Wan; Tsvi Katchalski; Christopher Churas; Sreya Ghosh; Sebastien Phan; Albert Lawrence; Yu Hao; Ziying Zhou; Ruijuan Chen; Yu Chen; Fa Zhang; Mark H Ellisman
Journal:  J Struct Biol       Date:  2017-04-06       Impact factor: 2.867

3.  PSF correction in soft X-ray tomography.

Authors:  Axel Ekman; Venera Weinhardt; Jian-Hua Chen; Gerry McDermott; Mark A Le Gros; Carolyn Larabell
Journal:  J Struct Biol       Date:  2018-06-13       Impact factor: 2.867

Review 4.  A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy.

Authors:  C O S Sorzano; J Vargas; J Otón; J M de la Rosa-Trevín; J L Vilas; M Kazemi; R Melero; L Del Caño; J Cuenca; P Conesa; J Gómez-Blanco; R Marabini; J M Carazo
Journal:  Biomed Res Int       Date:  2017-09-17       Impact factor: 3.411

5.  The advent of structural biology in situ by single particle cryo-electron tomography.

Authors:  Jesús G Galaz-Montoya; Steven J Ludtke
Journal:  Biophys Rep       Date:  2017-05-29

6.  Pushing the resolution limit by correcting the Ewald sphere effect in single-particle Cryo-EM reconstructions.

Authors:  Dongjie Zhu; Xiangxi Wang; Qianglin Fang; James L Van Etten; Michael G Rossmann; Zihe Rao; Xinzheng Zhang
Journal:  Nat Commun       Date:  2018-04-19       Impact factor: 14.919

7.  Efficient 3D-CTF correction for cryo-electron tomography using NovaCTF improves subtomogram averaging resolution to 3.4Å.

Authors:  Beata Turoňová; Florian K M Schur; William Wan; John A G Briggs
Journal:  J Struct Biol       Date:  2017-07-22       Impact factor: 2.867

8.  Ewald sphere correction using a single side-band image processing algorithm.

Authors:  Christopher J Russo; Richard Henderson
Journal:  Ultramicroscopy       Date:  2018-01-12       Impact factor: 2.689

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.