Literature DB >> 29908247

PSF correction in soft X-ray tomography.

Axel Ekman1, Venera Weinhardt2, Jian-Hua Chen1, Gerry McDermott1, Mark A Le Gros2, Carolyn Larabell3.   

Abstract

In this article, we introduce a linear approximation of the forward model of soft X-ray tomography, such that the reconstruction is solvable by standard iterative schemes. This linear model takes into account the three-dimensional point spread function (PSF) of the optical system, which consequently enhances the reconstruction of data. The feasibility of the model is demonstrated on both simulated and experimental data, based on theoretically estimated and experimentally measured PSFs.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  3D imaging; Image processing; Tomography

Mesh：

Year:  2018        PMID： 29908247      PMCID： PMC6371978          DOI： 10.1016/j.jsb.2018.06.003

Source DB:  PubMed          Journal:  J Struct Biol        ISSN： 1047-8477            Impact factor:   2.867


  32 in total

1.  Laboratory cryo soft X-ray microscopy.

Authors:  H M Hertz; O von Hofsten; M Bertilson; U Vogt; A Holmberg; J Reinspach; D Martz; M Selin; A E Christakou; J Jerlström-Hultqvist; S Svärd
Journal:  J Struct Biol       Date:  2011-11-20       Impact factor: 2.867

2.  Image formation in cellular X-ray microscopy.

Authors:  Joaquin Oton; C O S Sorzano; Eva Pereiro; Jesús Cuenca-Alba; Rafael Navarro; Jose M Carazo; Roberto Marabini
Journal:  J Struct Biol       Date:  2012-02-15       Impact factor: 2.867

3.  Fast, spatially varying CTF correction in TEM.

Authors:  Lenard M Voortman; Erik M Franken; Lucas J van Vliet; Bernd Rieger
Journal:  Ultramicroscopy       Date:  2012-05-14       Impact factor: 2.689

4.  Simulation of partially coherent image formation in a compact soft X-ray microscope.

Authors:  Olov von Hofsten; Per A C Takman; Ulrich Vogt
Journal:  Ultramicroscopy       Date:  2006-12-19       Impact factor: 2.689

5.  Measurement and restoration of the point spread function of fluorescence confocal microscopy.

Authors:  H Yoo; I Song; D-G Gweon
Journal:  J Microsc       Date:  2006-03       Impact factor: 1.758

6.  Measurement of the modulation transfer function of an X-ray microscope based on multiple Fourier orders analysis of a Siemens star.

Authors:  Joaquín Otón; Carlos Oscar S Sorzano; Roberto Marabini; Eva Pereiro; Jose M Carazo
Journal:  Opt Express       Date:  2015-04-20       Impact factor: 3.894

7.  Characterization of transfer function, resolution and depth of field of a soft X-ray microscope applied to tomography enhancement by Wiener deconvolution.

Authors:  Joaquín Otón; Eva Pereiro; Ana J Pérez-Berná; Laia Millach; Carlos Oscar S Sorzano; Roberto Marabini; José M Carazo
Journal:  Biomed Opt Express       Date:  2016-11-14       Impact factor: 3.732

Review 8.  Biological applications of cryo-soft X-ray tomography.

Authors:  E Duke; K Dent; M Razi; L M Collinson
Journal:  J Microsc       Date:  2014-06-18       Impact factor: 1.758

9.  Soft X-Ray Tomography Reveals Gradual Chromatin Compaction and Reorganization during Neurogenesis In Vivo.

Authors:  Mark A Le Gros; E Josephine Clowney; Angeliki Magklara; Angela Yen; Eirene Markenscoff-Papadimitriou; Bradley Colquitt; Markko Myllys; Manolis Kellis; Stavros Lomvardas; Carolyn A Larabell
Journal:  Cell Rep       Date:  2016-11-15       Impact factor: 9.423

10.  Fully three-dimensional defocus-gradient corrected backprojection in cryoelectron microscopy.

Authors:  Ivan G Kazantsev; Joanna Klukowska; Gabor T Herman; Laslo Cernetic
Journal:  Ultramicroscopy       Date:  2010-04-18       Impact factor: 2.689
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  5 in total

1.  Three-dimensional imaging of mitochondrial cristae complexity using cryo-soft X-ray tomography.

Authors:  Carla C Polo; Miriam H Fonseca-Alaniz; Jian-Hua Chen; Axel Ekman; Gerry McDermott; Florian Meneau; José E Krieger; Ayumi A Miyakawa
Journal:  Sci Rep       Date:  2020-12-03       Impact factor: 4.379

2.  Visualizing subcellular rearrangements in intact β cells using soft x-ray tomography.

Authors:  Kate L White; Jitin Singla; Valentina Loconte; Jian-Hua Chen; Axel Ekman; Liping Sun; Xianjun Zhang; John Paul Francis; Angdi Li; Wen Lin; Kaylee Tseng; Gerry McDermott; Frank Alber; Andrej Sali; Carolyn Larabell; Raymond C Stevens
Journal:  Sci Adv       Date:  2020-12-09       Impact factor: 14.136

3.  Foam-like phantoms for comparing tomography algorithms.

Authors:  Daniël M Pelt; Allard A Hendriksen; Kees Joost Batenburg
Journal:  J Synchrotron Radiat       Date:  2022-01-01       Impact factor: 2.616

4.  Using soft X-ray tomography for rapid whole-cell quantitative imaging of SARS-CoV-2-infected cells.

Authors:  Valentina Loconte; Jian-Hua Chen; Mirko Cortese; Axel Ekman; Mark A Le Gros; Carolyn Larabell; Ralf Bartenschlager; Venera Weinhardt
Journal:  Cell Rep Methods       Date:  2021-10-28

5.  A guide into the world of high-resolution 3D imaging: the case of soft X-ray tomography for the life sciences.

Authors:  Chidinma Adanna Okolo
Journal:  Biochem Soc Trans       Date:  2022-04-29       Impact factor: 4.919
  5 in total

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