Literature DB >> 10896140

Defocus-gradient corrected back-projection.

G J Jensen1, R D Kornberg.   

Abstract

Three-dimensional reconstructions of icosahedral viruses from cryoelectron microscope images have reached resolutions where the microscope depth of field is a significant resolution-limiting factor. An analytical treatment presented here shows how the depth of field limitation can be understood as an envelope function which gradually attenuates the signal, starting well before the numerical depth of field is actually reached. A simple modification to the well-known back-projection reconstruction algorithm is described, called the defocus-gradient corrected back-projection, which computationally corrects for the contrast transfer function along a defocus gradient. Computer simulations demonstrate how the algorithm effectively eliminates the depth of field limitation.

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Year:  2000        PMID: 10896140     DOI: 10.1016/s0304-3991(00)00005-x

Source DB:  PubMed          Journal:  Ultramicroscopy        ISSN: 0304-3991            Impact factor:   2.689


  16 in total

1.  The marine algal virus PpV01 has an icosahedral capsid with T=219 quasisymmetry.

Authors:  Xiaodong Yan; Paul R Chipman; Tonje Castberg; Gunnar Bratbak; Timothy S Baker
Journal:  J Virol       Date:  2005-07       Impact factor: 5.103

Review 2.  Challenges and opportunities in cryo-EM single-particle analysis.

Authors:  Dmitry Lyumkis
Journal:  J Biol Chem       Date:  2019-02-25       Impact factor: 5.157

Review 3.  Limiting factors in atomic resolution cryo electron microscopy: no simple tricks.

Authors:  Xing Zhang; Z Hong Zhou
Journal:  J Struct Biol       Date:  2011-05-24       Impact factor: 2.867

4.  Fully three-dimensional defocus-gradient corrected backprojection in cryoelectron microscopy.

Authors:  Ivan G Kazantsev; Joanna Klukowska; Gabor T Herman; Laslo Cernetic
Journal:  Ultramicroscopy       Date:  2010-04-18       Impact factor: 2.689

5.  PSF correction in soft X-ray tomography.

Authors:  Axel Ekman; Venera Weinhardt; Jian-Hua Chen; Gerry McDermott; Mark A Le Gros; Carolyn Larabell
Journal:  J Struct Biol       Date:  2018-06-13       Impact factor: 2.867

Review 6.  Towards atomic resolution structural determination by single-particle cryo-electron microscopy.

Authors:  Z Hong Zhou
Journal:  Curr Opin Struct Biol       Date:  2008-04-09       Impact factor: 6.809

7.  Correcting for the ewald sphere in high-resolution single-particle reconstructions.

Authors:  Peter A Leong; Xuekui Yu; Z Hong Zhou; Grant J Jensen
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

8.  The advent of structural biology in situ by single particle cryo-electron tomography.

Authors:  Jesús G Galaz-Montoya; Steven J Ludtke
Journal:  Biophys Rep       Date:  2017-05-29

9.  Pushing the resolution limit by correcting the Ewald sphere effect in single-particle Cryo-EM reconstructions.

Authors:  Dongjie Zhu; Xiangxi Wang; Qianglin Fang; James L Van Etten; Michael G Rossmann; Zihe Rao; Xinzheng Zhang
Journal:  Nat Commun       Date:  2018-04-19       Impact factor: 14.919

10.  Ewald sphere correction using a single side-band image processing algorithm.

Authors:  Christopher J Russo; Richard Henderson
Journal:  Ultramicroscopy       Date:  2018-01-12       Impact factor: 2.689

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