Literature DB >> 20455752

Standardization and omics science: technical and social dimensions are inseparable and demand symmetrical study.

Christina Holmes1, Fiona McDonald, Mavis Jones, Vural Ozdemir, Janice E Graham.   

Abstract

Standardization is critical to scientists and regulators to ensure the quality and interoperability of research processes, as well as the safety and efficacy of the attendant research products. This is perhaps most evident in the case of "omics science," which is enabled by a host of diverse high-throughput technologies such as genomics, proteomics, and metabolomics. But standards are of interest to (and shaped by) others far beyond the immediate realm of individual scientists, laboratories, scientific consortia, or governments that develop, apply, and regulate them. Indeed, scientific standards have consequences for the social, ethical, and legal environment in which innovative technologies are regulated, and thereby command the attention of policy makers and citizens. This article argues that standardization of omics science is both technical and social. A critical synthesis of the social science literature indicates that: (1) standardization requires a degree of flexibility to be practical at the level of scientific practice in disparate sites; (2) the manner in which standards are created, and by whom, will impact their perceived legitimacy and therefore their potential to be used; and (3) the process of standardization itself is important to establishing the legitimacy of an area of scientific research.

Mesh:

Year:  2010        PMID: 20455752      PMCID: PMC3128304          DOI: 10.1089/omi.2010.0022

Source DB:  PubMed          Journal:  OMICS        ISSN: 1536-2310


  22 in total

1.  Reporting financial conflicts of interest and relationships between investigators and research sponsors.

Authors:  C D DeAngelis; P B Fontanarosa; A Flanagin
Journal:  JAMA       Date:  2001-07-04       Impact factor: 56.272

2.  Dancing with the porcupine: rules for governing the university-industry relationship.

Authors:  S Lewis; P Baird; R G Evans; W A Ghali; C J Wright; E Gibson; F Baylis
Journal:  CMAJ       Date:  2001-09-18       Impact factor: 8.262

3.  Regulating academic-industrial research relationships--solving problems or stifling progress?

Authors:  Thomas P Stossel
Journal:  N Engl J Med       Date:  2005-09-08       Impact factor: 91.245

Review 4.  MGED standards: work in progress.

Authors:  Catherine A Ball; Alvis Brazma
Journal:  OMICS       Date:  2006

Review 5.  Data standards: a call to action.

Authors:  Cath Brooksbank; John Quackenbush
Journal:  OMICS       Date:  2006

Review 6.  Experimental standards for high-throughput proteomics.

Authors:  Jason M Hogan; Roger Higdon; Eugene Kolker
Journal:  OMICS       Date:  2006

7.  Genome Reviews: standardizing content and representation of information about complete genomes.

Authors:  Peter Sterk; Paul J Kersey; Rolf Apweiler
Journal:  OMICS       Date:  2006

8.  Standardization of the diagnosis of dementia in the Canadian Study of Health and Aging.

Authors:  J E Graham; K Rockwood; B L Beattie; I McDowell; R Eastwood; S Gauthier
Journal:  Neuroepidemiology       Date:  1996       Impact factor: 3.282

Review 9.  The work of the Human Proteome Organisation's Proteomics Standards Initiative (HUPO PSI).

Authors:  Chris F Taylor; Henning Hermjakob; Randall K Julian; John S Garavelli; Ruedi Aebersold; Rolf Apweiler
Journal:  OMICS       Date:  2006

Review 10.  Targeted proteomics for validation of biomarkers in clinical samples.

Authors:  Xiaoying Ye; Josip Blonder; Timothy D Veenstra
Journal:  Brief Funct Genomic Proteomic       Date:  2008-12-24
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  6 in total

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Authors:  Bernhard Voelkl; Naomi S Altman; Anders Forsman; Wolfgang Forstmeier; Jessica Gurevitch; Ivana Jaric; Natasha A Karp; Martien J Kas; Holger Schielzeth; Tom Van de Casteele; Hanno Würbel
Journal:  Nat Rev Neurosci       Date:  2020-06-02       Impact factor: 34.870

2.  Metabolomics in toxicology and preclinical research.

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Journal:  ALTEX       Date:  2013       Impact factor: 6.043

3.  Eye-Tracking in Infants and Young Children at Risk for Autism Spectrum Disorder: A Systematic Review of Visual Stimuli in Experimental Paradigms.

Authors:  Ann M Mastergeorge; Chanaka Kahathuduwa; Jessica Blume
Journal:  J Autism Dev Disord       Date:  2021-08

4.  Bioinformatics Tools for Mass Spectroscopy-Based Metabolomic Data Processing and Analysis.

Authors:  Masahiro Sugimoto; Masato Kawakami; Martin Robert; Tomoyoshi Soga; Masaru Tomita
Journal:  Curr Bioinform       Date:  2012-03       Impact factor: 3.543

5.  Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data.

Authors:  Kyle D Brumfield; Anwar Huq; Rita R Colwell; James L Olds; Menu B Leddy
Journal:  PLoS One       Date:  2020-02-13       Impact factor: 3.240

Review 6.  Omics strategies for revealing Yersinia pestis virulence.

Authors:  Ruifu Yang; Zongmin Du; Yanping Han; Lei Zhou; Yajun Song; Dongsheng Zhou; Yujun Cui
Journal:  Front Cell Infect Microbiol       Date:  2012-12-13       Impact factor: 5.293

  6 in total

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