Literature DB >> 19109305

Targeted proteomics for validation of biomarkers in clinical samples.

Xiaoying Ye1, Josip Blonder, Timothy D Veenstra.   

Abstract

The rapid rise and application of proteomic technologies has resulted in an exponential increase in the number of proteins that have been discovered and presented as 'potential' biomarkers for specific diseases. Unfortunately, the number of biomarkers approved for use by the Food and Drug Administration has not risen in likewise manner. While there are a number of reasons for this discrepancy, this glut of 'potential' biomarkers also indicates the need for validation methods to confirm or refute their utility in clinical diagnostics. For this reason, the emphasis on developing methods to target and measure the absolute quantity of specific proteins and peptides in complex proteomic samples has grown.

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Year:  2008        PMID: 19109305      PMCID: PMC2722261          DOI: 10.1093/bfgp/eln050

Source DB:  PubMed          Journal:  Brief Funct Genomic Proteomic        ISSN: 1473-9550


  29 in total

1.  Proteomics. Public-private group maps out initiatives.

Authors:  Jocelyn Kaiser
Journal:  Science       Date:  2002-05-03       Impact factor: 47.728

Review 2.  Measuring gene expression by quantitative proteome analysis.

Authors:  S P Gygi; B Rist; R Aebersold
Journal:  Curr Opin Biotechnol       Date:  2000-08       Impact factor: 9.740

Review 3.  Quantitative screening of protein biomarkers of early glycation, advanced glycation, oxidation and nitrosation in cellular and extracellular proteins by tandem mass spectrometry multiple reaction monitoring.

Authors:  N Ahmed; P J Thornalley
Journal:  Biochem Soc Trans       Date:  2003-12       Impact factor: 5.407

4.  Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS.

Authors:  Scott A Gerber; John Rush; Olaf Stemman; Marc W Kirschner; Steven P Gygi
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-27       Impact factor: 11.205

5.  Mass spectrometric quantitation of peptides and proteins using Stable Isotope Standards and Capture by Anti-Peptide Antibodies (SISCAPA).

Authors:  N Leigh Anderson; Norman G Anderson; Lee R Haines; Darryl B Hardie; Robert W Olafson; Terry W Pearson
Journal:  J Proteome Res       Date:  2004 Mar-Apr       Impact factor: 4.466

6.  The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications.

Authors:  Donald S Kirkpatrick; Scott A Gerber; Steven P Gygi
Journal:  Methods       Date:  2005-01-12       Impact factor: 3.608

7.  Differences among techniques for high-abundant protein depletion.

Authors:  Nina Zolotarjova; James Martosella; Gordon Nicol; Jerome Bailey; Barry E Boyes; William C Barrett
Journal:  Proteomics       Date:  2005-08       Impact factor: 3.984

8.  Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis.

Authors:  Christine C Wu; Michael J MacCoss; Kathryn E Howell; Dwight E Matthews; John R Yates
Journal:  Anal Chem       Date:  2004-09-01       Impact factor: 6.986

9.  Tissue microarrays for high-throughput molecular profiling of tumor specimens.

Authors:  J Kononen; L Bubendorf; A Kallioniemi; M Bärlund; P Schraml; S Leighton; J Torhorst; M J Mihatsch; G Sauter; O P Kallioniemi
Journal:  Nat Med       Date:  1998-07       Impact factor: 53.440

10.  A proteomic view of the Plasmodium falciparum life cycle.

Authors:  Laurence Florens; Michael P Washburn; J Dale Raine; Robert M Anthony; Munira Grainger; J David Haynes; J Kathleen Moch; Nemone Muster; John B Sacci; David L Tabb; Adam A Witney; Dirk Wolters; Yimin Wu; Malcolm J Gardner; Anthony A Holder; Robert E Sinden; John R Yates; Daniel J Carucci
Journal:  Nature       Date:  2002-10-03       Impact factor: 49.962

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  11 in total

1.  Enhanced sensitivity for selected reaction monitoring mass spectrometry-based targeted proteomics using a dual stage electrodynamic ion funnel interface.

Authors:  Mahmud Hossain; David T Kaleta; Errol W Robinson; Tao Liu; Rui Zhao; Jason S Page; Ryan T Kelly; Ronald J Moore; Keqi Tang; David G Camp; Wei-Jun Qian; Richard D Smith
Journal:  Mol Cell Proteomics       Date:  2010-04-21       Impact factor: 5.911

Review 2.  Standardization and omics science: technical and social dimensions are inseparable and demand symmetrical study.

Authors:  Christina Holmes; Fiona McDonald; Mavis Jones; Vural Ozdemir; Janice E Graham
Journal:  OMICS       Date:  2010-06

3.  Multiplex targeted proteomic assay for biomarker detection in plasma: a pancreatic cancer biomarker case study.

Authors:  Sheng Pan; Ru Chen; Randall E Brand; Sarah Hawley; Yasuko Tamura; Philip R Gafken; Brian P Milless; David R Goodlett; John Rush; Teresa A Brentnall
Journal:  J Proteome Res       Date:  2012-02-08       Impact factor: 4.466

4.  Closing the gap between brain banks and proteomics to advance the study of neurodegenerative diseases.

Authors:  Renata Elaine Paraizo Leite; Lea Tenenholz Grinberg
Journal:  Proteomics Clin Appl       Date:  2015-09-08       Impact factor: 3.494

5.  Plasmodium falciparum malaria: proteomic studies.

Authors:  Rodrigo Siqueira-Batista; Andréia Patrícia Gomes; Eduardo Gomes de Mendonça; Rodrigo Roger Vitorino; Sarah Fumian Milward de Azevedo; Rodrigo de Barros Freitas; Luiz Alberto Santana; Maria Goreti de Almeida Oliveira
Journal:  Rev Bras Ter Intensiva       Date:  2012-12

6.  Using an isolated rat kidney model to identify kidney origin proteins in urine.

Authors:  Lulu Jia; Xundou Li; Chen Shao; Lilong Wei; Menglin Li; Zhengguang Guo; Zhihong Liu; Youhe Gao
Journal:  PLoS One       Date:  2013-06-25       Impact factor: 3.240

7.  Modeling and systematic analysis of biomarker validation using selected reaction monitoring.

Authors:  Esmaeil Atashpaz-Gargari; Ulisses M Braga-Neto; Edward R Dougherty
Journal:  EURASIP J Bioinform Syst Biol       Date:  2014-11-15

8.  A Combination of DNA-peptide Probes and Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS): A Quasi-Targeted Proteomics Approach for Multiplexed MicroRNA Quantification.

Authors:  Feifei Xu; Weixian Zhou; Jianxiang Cao; Qingqing Xu; Dechen Jiang; Yun Chen
Journal:  Theranostics       Date:  2017-07-08       Impact factor: 11.556

Review 9.  Genomic and oncoproteomic advances in detection and treatment of colorectal cancer.

Authors:  Seamus M McHugh; Jill O'Donnell; Peter Gillen
Journal:  World J Surg Oncol       Date:  2009-04-01       Impact factor: 2.754

10.  Laboratory Medicine in the Scope of Proteomics and Genomics.

Authors:  Urszula Demkow
Journal:  EJIFCC       Date:  2010-10-29
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