Literature DB >> 16901215

Genome Reviews: standardizing content and representation of information about complete genomes.

Peter Sterk1, Paul J Kersey, Rolf Apweiler.   

Abstract

The Genome Reviews database provides up-to-date, standardized, and comprehensively annotated views of the genomic sequence of organisms with completely deciphered genomes. Currently, Genome Reviews contains information about the genomes of archaea, bacteria, and selected lower eukaryotes. Expansion to viral genomes and additional eukaryotes is planned. Genome Reviews is available for download in relational and flat file formats. In this paper, the rationale behind the creation of Genome Reviews, the approach taken in standardizing the data and its representation, and particular issues encountered in doing so are described.

Mesh：

Year:  2006        PMID： 16901215     DOI： 10.1089/omi.2006.10.114

Source DB:  PubMed          Journal:  OMICS        ISSN： 1536-2310


  14 in total

Review 1.  Standardization and omics science: technical and social dimensions are inseparable and demand symmetrical study.

Authors:  Christina Holmes; Fiona McDonald; Mavis Jones; Vural Ozdemir; Janice E Graham
Journal:  OMICS       Date:  2010-06

Review 2.  In silico characterization of proteins: UniProt, InterPro and Integr8.

Authors:  Nicola Jane Mulder; Paul Kersey; Manuela Pruess; Rolf Apweiler
Journal:  Mol Biotechnol       Date:  2007-10-04       Impact factor: 2.695

3.  Exploiting genomic patterns to discover new supramolecular protein assemblies.

Authors:  Morgan Beeby; Thomas A Bobik; Todd O Yeates
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

Review 4.  In silico models of cancer.

Authors:  Lucas B Edelman; James A Eddy; Nathan D Price
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2010 Jul-Aug

5.  An ABC transporter and an outer membrane lipoprotein participate in posttranslational activation of type VI secretion in Pseudomonas aeruginosa.

Authors:  Maria G Casabona; Julie M Silverman; Khady M Sall; Frédéric Boyer; Yohann Couté; Jessica Poirel; Didier Grunwald; Joseph D Mougous; Sylvie Elsen; Ina Attree
Journal:  Environ Microbiol       Date:  2012-07-06       Impact factor: 5.491

6.  Burkholderia type VI secretion systems have distinct roles in eukaryotic and bacterial cell interactions.

Authors:  Sandra Schwarz; T Eoin West; Frédéric Boyer; Wen-Chi Chiang; Mike A Carl; Rachel D Hood; Laurence Rohmer; Tim Tolker-Nielsen; Shawn J Skerrett; Joseph D Mougous
Journal:  PLoS Pathog       Date:  2010-08-26       Impact factor: 6.823

7.  Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources?

Authors:  Frédéric Boyer; Gwennaële Fichant; Jérémie Berthod; Yves Vandenbrouck; Ina Attree
Journal:  BMC Genomics       Date:  2009-03-12       Impact factor: 3.969

8.  GenoQuery: a new querying module for functional annotation in a genomic warehouse.

Authors:  Frédéric Lemoine; Bernard Labedan; Christine Froidevaux
Journal:  Bioinformatics       Date:  2008-07-01       Impact factor: 6.937

9.  From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later.

Authors:  Valérie Barbe; Stéphane Cruveiller; Frank Kunst; Patricia Lenoble; Guillaume Meurice; Agnieszka Sekowska; David Vallenet; Tingzhang Wang; Ivan Moszer; Claudine Médigue; Antoine Danchin
Journal:  Microbiology (Reading)       Date:  2009-04-21       Impact factor: 2.777

10.  Bacillus subtilis RNase Y activity in vivo analysed by tiling microarrays.

Authors:  Soumaya Laalami; Philippe Bessières; Anna Rocca; Léna Zig; Pierre Nicolas; Harald Putzer
Journal:  PLoS One       Date:  2013-01-10       Impact factor: 3.240
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