Literature DB >> 21184003

An architectural genetic and epigenetic perspective.

Gary S Stein1, Janet L Stein, Andre J van Wijnen, Jane B Lian, Sayyed K Zaidi, Jeffrey A Nickerson, Martin A Montecino, Daniel W Young.   

Abstract

The organization and intranuclear localization of nucleic acids and regulatory proteins contribute to both genetic and epigenetic parameters of biological control. Regulatory machinery in the cell nucleus is functionally compartmentalized in microenvironments (focally organized sites where regulatory factors reside) that provide threshold levels of factors required for transcription, replication, repair and cell survival. The common denominator for nuclear organization of regulatory machinery is that each component of control is architecturally configured and every component of control is embedded in architecturally organized networks that provide an infrastructure for integration and transduction of regulatory signals. It is realistic to anticipate emerging mechanisms that account for the organization and assembly of regulatory complexes within the cell nucleus can provide novel options for cancer diagnosis and therapy with maximal specificity, reduced toxicity and minimal off-target complications.

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Year:  2010        PMID: 21184003      PMCID: PMC3251170          DOI: 10.1039/c0ib00103a

Source DB:  PubMed          Journal:  Integr Biol (Camb)        ISSN: 1757-9694            Impact factor:   2.192


  87 in total

Review 1.  Runx2 control of organization, assembly and activity of the regulatory machinery for skeletal gene expression.

Authors:  Gary S Stein; Jane B Lian; Andre J van Wijnen; Janet L Stein; Martin Montecino; Amjad Javed; Sayyed K Zaidi; Daniel W Young; Je-Yong Choi; Shirwin M Pockwinse
Journal:  Oncogene       Date:  2004-05-24       Impact factor: 9.867

2.  Quantitative signature for architectural organization of regulatory factors using intranuclear informatics.

Authors:  Daniel W Young; Sayyed K Zaidi; Paul S Furcinitti; Amjad Javed; Andre J van Wijnen; Janet L Stein; Jane B Lian; Gary S Stein
Journal:  J Cell Sci       Date:  2004-09-14       Impact factor: 5.285

3.  Gene order and dynamic domains.

Authors:  Steven T Kosak; Mark Groudine
Journal:  Science       Date:  2004-10-22       Impact factor: 47.728

4.  A novel macromolecular structure is a target of the promyelocyte-retinoic acid receptor oncoprotein.

Authors:  J A Dyck; G G Maul; W H Miller; J D Chen; A Kakizuka; R M Evans
Journal:  Cell       Date:  1994-01-28       Impact factor: 41.582

5.  The nuclear matrix: three-dimensional architecture and protein composition.

Authors:  D G Capco; K M Wan; S Penman
Journal:  Cell       Date:  1982-07       Impact factor: 41.582

6.  The nuclear matrix protein NMP-1 is the transcription factor YY1.

Authors:  B Guo; P R Odgren; A J van Wijnen; T J Last; J Nickerson; S Penman; J B Lian; J L Stein; G S Stein
Journal:  Proc Natl Acad Sci U S A       Date:  1995-11-07       Impact factor: 11.205

7.  The tissue-specific nuclear matrix protein, NMP-2, is a member of the AML/CBF/PEBP2/runt domain transcription factor family: interactions with the osteocalcin gene promoter.

Authors:  H L Merriman; A J van Wijnen; S Hiebert; J P Bidwell; E Fey; J Lian; J Stein; G S Stein
Journal:  Biochemistry       Date:  1995-10-10       Impact factor: 3.162

8.  Fidelity of Runx2 activity in breast cancer cells is required for the generation of metastases-associated osteolytic disease.

Authors:  George L Barnes; Kerri E Hebert; Mohammad Kamal; Amjad Javed; Thomas A Einhorn; Jane B Lian; Gary S Stein; Louis C Gerstenfeld
Journal:  Cancer Res       Date:  2004-07-01       Impact factor: 12.701

Review 9.  Chromosomal translocations in leukaemia.

Authors:  C E Gauwerky; C M Croce
Journal:  Semin Cancer Biol       Date:  1993-12       Impact factor: 15.707

10.  A new method of preparing embeddment-free sections for transmission electron microscopy: applications to the cytoskeletal framework and other three-dimensional networks.

Authors:  D G Capco; G Krochmalnic; S Penman
Journal:  J Cell Biol       Date:  1984-05       Impact factor: 10.539

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  4 in total

Review 1.  Epigenetic histone modifications and master regulators as determinants of context dependent nuclear receptor activity in bone cells.

Authors:  J Wesley Pike; Mark B Meyer; Hillary C St John; Nancy A Benkusky
Journal:  Bone       Date:  2015-03-27       Impact factor: 4.398

2.  Cell cycle gene expression networks discovered using systems biology: Significance in carcinogenesis.

Authors:  Robert E Scott; Prachi N Ghule; Janet L Stein; Gary S Stein
Journal:  J Cell Physiol       Date:  2015-10       Impact factor: 6.384

Review 3.  Nuclear organization mediates cancer-compromised genetic and epigenetic control.

Authors:  Sayyed K Zaidi; Andrew J Fritz; Kirsten M Tracy; Jonathan A Gordon; Coralee E Tye; Joseph Boyd; Andre J Van Wijnen; Jeffrey A Nickerson; Antony N Imbalzano; Jane B Lian; Janet L Stein; Gary S Stein
Journal:  Adv Biol Regul       Date:  2018-05-09

Review 4.  Move or die: the fate of the Tax oncoprotein of HTLV-1.

Authors:  Julie Lodewick; Isabelle Lamsoul; Françoise Bex
Journal:  Viruses       Date:  2011-06-15       Impact factor: 5.048

  4 in total

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