Literature DB >> 20421740

Investigating the function of CAF1 deadenylases during plant stress responses.

Justin W Walley1, Dior R Kelley, Tatyan Savchenko, Katayoon Dehesh.   

Abstract

Alteration of gene expression plays a central role in the transmission of developmental and environmental signals. The steady-state transcript level within a cell is determined by the combination of the rate synthesis and the rate of degradation. While altering the rate of mRNA turnover is known to provide a rapid mechanism to reprogram transcript levels, research has largely focused on changes in transcriptional regulation as a mechanism to control mRNA levels. However, recent studies have begun to explore the role of mRNA decay in reprogramming the transcriptome.

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Year:  2010        PMID: 20421740      PMCID: PMC3115028          DOI: 10.4161/psb.5.7.11578

Source DB:  PubMed          Journal:  Plant Signal Behav        ISSN: 1559-2316


  32 in total

1.  Concerted action of poly(A) nucleases and decapping enzyme in mammalian mRNA turnover.

Authors:  Akio Yamashita; Tsung-Cheng Chang; Yukiko Yamashita; Wenmiao Zhu; Zhenping Zhong; Chyi-Ying A Chen; Ann-Bin Shyu
Journal:  Nat Struct Mol Biol       Date:  2005-11-13       Impact factor: 15.369

Review 2.  Messenger RNA turnover in eukaryotes: pathways and enzymes.

Authors:  Sylke Meyer; Claudia Temme; Elmar Wahle
Journal:  Crit Rev Biochem Mol Biol       Date:  2004 Jul-Aug       Impact factor: 8.250

3.  PUF proteins bind Pop2p to regulate messenger RNAs.

Authors:  Aaron C Goldstrohm; Brad A Hook; Daniel J Seay; Marvin Wickens
Journal:  Nat Struct Mol Biol       Date:  2006-05-21       Impact factor: 15.369

4.  Smaug recruits the CCR4/POP2/NOT deadenylase complex to trigger maternal transcript localization in the early Drosophila embryo.

Authors:  Jennifer L Semotok; Ramona L Cooperstock; Benjamin D Pinder; Heli K Vari; Howard D Lipshitz; Craig A Smibert
Journal:  Curr Biol       Date:  2005-02-22       Impact factor: 10.834

5.  The Arabidopsis cold-responsive transcriptome and its regulation by ICE1.

Authors:  Byeong-ha Lee; David A Henderson; Jian-Kang Zhu
Journal:  Plant Cell       Date:  2005-10-07       Impact factor: 11.277

6.  Dhh1p, a putative RNA helicase, associates with the general transcription factors Pop2p and Ccr4p from Saccharomyces cerevisiae.

Authors:  H Hata; H Mitsui; H Liu; Y Bai; C L Denis; Y Shimizu; A Sakai
Journal:  Genetics       Date:  1998-02       Impact factor: 4.562

7.  C. elegans homologue of the Caf1 gene, which encodes a subunit of the CCR4-NOT complex, is essential for embryonic and larval development and for meiotic progression.

Authors:  Laurent Molin; Alain Puisieux
Journal:  Gene       Date:  2005-09-26       Impact factor: 3.688

8.  mRNA deadenylation by PARN is essential for embryogenesis in higher plants.

Authors:  Sergei V Reverdatto; James A Dutko; Julia A Chekanova; Douglas A Hamilton; Dmitry A Belostotsky
Journal:  RNA       Date:  2004-07-09       Impact factor: 4.942

9.  Oligo-astheno-teratozoospermia in mice lacking Cnot7, a regulator of retinoid X receptor beta.

Authors:  Takahisa Nakamura; Ryoji Yao; Takehiko Ogawa; Toru Suzuki; Chizuru Ito; Naoki Tsunekawa; Kimiko Inoue; Rieko Ajima; Takashi Miyasaka; Yutaka Yoshida; Atsuo Ogura; Kiyotaka Toshimori; Toshiaki Noce; Tadashi Yamamoto; Tetsuo Noda
Journal:  Nat Genet       Date:  2004-04-25       Impact factor: 38.330

10.  AtPARN is an essential poly(A) ribonuclease in Arabidopsis.

Authors:  Yukako Chiba; Mark A Johnson; Preetmoninder Lidder; Jonathan T Vogel; Harrie van Erp; Pamela J Green
Journal:  Gene       Date:  2004-03-17       Impact factor: 3.688

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  11 in total

1.  AtHESPERIN: a novel regulator of circadian rhythms with poly(A)-degrading activity in plants.

Authors:  Costas Delis; Afrodite Krokida; Anastasia Tomatsidou; Daniela Tsikou; Rafailia A A Beta; Maria Tsioumpekou; Julietta Moustaka; Georgios Stravodimos; Demetres D Leonidas; Nikolaos A A Balatsos; Kalliope K Papadopoulou
Journal:  RNA Biol       Date:  2016       Impact factor: 4.652

Review 2.  Biogenesis, turnover, and mode of action of plant microRNAs.

Authors:  Kestrel Rogers; Xuemei Chen
Journal:  Plant Cell       Date:  2013-07-23       Impact factor: 11.277

Review 3.  Proteins involved in the degradation of cytoplasmic mRNA in the major eukaryotic model systems.

Authors:  Aleksandra Siwaszek; Marta Ukleja; Andrzej Dziembowski
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

Review 4.  Coping with stresses: roles of calcium- and calcium/calmodulin-regulated gene expression.

Authors:  Anireddy S N Reddy; Gul S Ali; Helena Celesnik; Irene S Day
Journal:  Plant Cell       Date:  2011-06-03       Impact factor: 11.277

5.  Divergence of the expression and subcellular localization of CCR4-associated factor 1 (CAF1) deadenylase proteins in Oryza sativa.

Authors:  Wei-Lun Chou; Li-Fen Huang; Jhen-Cheng Fang; Ching-Hui Yeh; Chwan-Yang Hong; Shaw-Jye Wu; Chung-An Lu
Journal:  Plant Mol Biol       Date:  2014-05-08       Impact factor: 4.076

6.  Transcriptomic changes in Echinochloa colona in response to treatment with the herbicide imazamox.

Authors:  Alice A Wright; Rajkumar Sasidharan; Liisa Koski; Marianela Rodriguez-Carres; Daniel G Peterson; Vijay K Nandula; Jeffery D Ray; Jason A Bond; David R Shaw
Journal:  Planta       Date:  2017-10-11       Impact factor: 4.116

7.  Novel interaction between CCR4 and CAF1 in rice CCR4-NOT deadenylase complex.

Authors:  Wei-Lun Chou; Yue-Lin Chung; Jhen-Cheng Fang; Chung-An Lu
Journal:  Plant Mol Biol       Date:  2016-10-06       Impact factor: 4.076

8.  A CCR4-associated factor 1, OsCAF1B, confers tolerance of low-temperature stress to rice seedlings.

Authors:  Jhen-Cheng Fang; Yin-Chuan Tsai; Wei-Lun Chou; Hsin-Yi Liu; Chun-Chen Chang; Shaw-Jye Wu; Chung-An Lu
Journal:  Plant Mol Biol       Date:  2020-10-06       Impact factor: 4.076

9.  Molecular Targets and Biological Functions of cAMP Signaling in Arabidopsis.

Authors:  Ruqiang Xu; Yanhui Guo; Song Peng; Jinrui Liu; Panyu Li; Wenjing Jia; Junheng Zhao
Journal:  Biomolecules       Date:  2021-05-03

10.  Genome-Wide and Comprehensive Analysis of the Multiple Stress-Related CAF1 (CCR4-Associated Factor 1) Family and Its Expression in Poplar.

Authors:  Pu Wang; Lingling Li; Hui Wei; Weibo Sun; Peijun Zhou; Sheng Zhu; Dawei Li; Qiang Zhuge
Journal:  Plants (Basel)       Date:  2021-05-14
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