Literature DB >> 26619288

AtHESPERIN: a novel regulator of circadian rhythms with poly(A)-degrading activity in plants.

Costas Delis1, Afrodite Krokida1, Anastasia Tomatsidou1, Daniela Tsikou1, Rafailia A A Beta1, Maria Tsioumpekou1, Julietta Moustaka1, Georgios Stravodimos1, Demetres D Leonidas1, Nikolaos A A Balatsos1, Kalliope K Papadopoulou1.   

Abstract

We report the identification and characterization of a novel gene, AtHesperin (AtHESP) that codes for a deadenylase in Arabidopsis thaliana. The gene is under circadian clock-gene regulation and has similarity to the mammalian Nocturnin. AtHESP can efficiently degrade poly(A) substrates exhibiting allosteric kinetics. Size exclusion chromatography and native electrophoresis coupled with kinetic analysis support that the native enzyme is oligomeric with at least 3 binding sites. Knockdown and overexpression of AtHESP in plant lines affects the expression and rhythmicity of the clock core oscillator genes TOC1 and CCA1. This study demonstrates an evolutionary conserved poly(A)-degrading activity in plants and suggests deadenylation as a mechanism involved in the regulation of the circadian clock. A role of AtHESP in stress response in plants is also depicted.

Entities:  

Keywords:  Allosteric; Arabidopsis; RNA stability; circadian; deadenylation; nocturnin

Mesh:

Substances:

Year:  2016        PMID: 26619288      PMCID: PMC4829295          DOI: 10.1080/15476286.2015.1119363

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  79 in total

1.  Orchestrated transcription of key pathways in Arabidopsis by the circadian clock.

Authors:  S L Harmer; J B Hogenesch; M Straume; H S Chang; B Han; T Zhu; X Wang; J A Kreps; S A Kay
Journal:  Science       Date:  2000-12-15       Impact factor: 47.728

Review 2.  Chlorophyll fluorescence--a practical guide.

Authors:  K Maxwell; G N Johnson
Journal:  J Exp Bot       Date:  2000-04       Impact factor: 6.992

Review 3.  Regulation of output from the plant circadian clock.

Authors:  Esther Yakir; Dror Hilman; Yael Harir; Rachel M Green
Journal:  FEBS J       Date:  2007-01       Impact factor: 5.542

Review 4.  Chromatin remodeling and alternative splicing: pre- and post-transcriptional regulation of the Arabidopsis circadian clock.

Authors:  Rossana Henriques; Paloma Mas
Journal:  Semin Cell Dev Biol       Date:  2013-03-15       Impact factor: 7.727

5.  Self-association of poly(A)-specific ribonuclease (PARN) triggered by the R3H domain.

Authors:  Guang-Jun He; Yong-Bin Yan
Journal:  Biochim Biophys Acta       Date:  2014-09-16

Review 6.  Transcriptional and post-transcriptional regulation of the circadian clock of cyanobacteria and Neurospora.

Authors:  Michael Brunner; Tobias Schafmeier
Journal:  Genes Dev       Date:  2006-05-01       Impact factor: 11.361

7.  Genome-wide expression analysis of mouse liver reveals CLOCK-regulated circadian output genes.

Authors:  Katsutaka Oishi; Koyomi Miyazaki; Koji Kadota; Reiko Kikuno; Takahiro Nagase; Gen-ichi Atsumi; Naoki Ohkura; Takashi Azama; Miho Mesaki; Shima Yukimasa; Hisato Kobayashi; Chisato Iitaka; Takashi Umehara; Masami Horikoshi; Takashi Kudo; Yoshihisa Shimizu; Masahiko Yano; Morito Monden; Kazuhiko Machida; Juzo Matsuda; Shuichi Horie; Takeshi Todo; Norio Ishida
Journal:  J Biol Chem       Date:  2003-07-15       Impact factor: 5.157

Review 8.  Modulation of poly(A)-specific ribonuclease (PARN): current knowledge and perspectives.

Authors:  N A A Balatsos; P Maragozidis; D Anastasakis; C Stathopoulos
Journal:  Curr Med Chem       Date:  2012       Impact factor: 4.530

9.  The exosome regulates circadian gene expression in a posttranscriptional negative feedback loop.

Authors:  Jinhu Guo; Ping Cheng; Haiyan Yuan; Yi Liu
Journal:  Cell       Date:  2009-09-10       Impact factor: 41.582

10.  Dissecting differential gene expression within the circadian neuronal circuit of Drosophila.

Authors:  Emi Nagoshi; Ken Sugino; Ela Kula; Etsuko Okazaki; Taro Tachibana; Sacha Nelson; Michael Rosbash
Journal:  Nat Neurosci       Date:  2009-12-06       Impact factor: 24.884

View more
  2 in total

Review 1.  Polysomes, Stress Granules, and Processing Bodies: A Dynamic Triumvirate Controlling Cytoplasmic mRNA Fate and Function.

Authors:  Thanin Chantarachot; Julia Bailey-Serres
Journal:  Plant Physiol       Date:  2017-11-20       Impact factor: 8.340

2.  Biochemical and in silico identification of the active site and the catalytic mechanism of the circadian deadenylase HESPERIN.

Authors:  Rafailia A A Beta; Athanasios Kyritsis; Veroniki Douka; Eirini Papanastasi; Marianna Rizouli; Demetres D Leonidas; Dimitrios Vlachakis; Nikolaos A A Balatsos
Journal:  FEBS Open Bio       Date:  2022-03-29       Impact factor: 2.693

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.