Literature DB >> 20420525

Evolutionary adaptations to dietary changes.

F Luca1, G H Perry, A Di Rienzo.   

Abstract

Through cultural innovation and changes in habitat and ecology, there have been a number of major dietary shifts in human evolution, including meat eating, cooking, and those associated with plant and animal domestication. The identification of signatures of adaptations to such dietary changes in the genome of extant primates (including humans) may shed light not only on the evolutionary history of our species, but also on the mechanisms that underlie common metabolic diseases in modern human populations. In this review, we provide a brief overview of the major dietary shifts that occurred during hominin evolution, and we discuss the methods and approaches used to identify signals of natural selection in patterns of sequence variation. We then review the results of studies aimed at detecting the genetic loci that played a major role in dietary adaptations and conclude by outlining the potential of future studies in this area.

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Year:  2010        PMID: 20420525      PMCID: PMC4163920          DOI: 10.1146/annurev-nutr-080508-141048

Source DB:  PubMed          Journal:  Annu Rev Nutr        ISSN: 0199-9885            Impact factor:   11.848


  153 in total

1.  Selective pressures on the olfactory receptor repertoire since the human-chimpanzee divergence.

Authors:  Alexander A Gimelbrant; Helen Skaletsky; Andrew Chess
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-03       Impact factor: 11.205

2.  Using environmental correlations to identify loci underlying local adaptation.

Authors:  Graham Coop; David Witonsky; Anna Di Rienzo; Jonathan K Pritchard
Journal:  Genetics       Date:  2010-06-01       Impact factor: 4.562

3.  Isotopic evidence for dietary variability in the early hominin Paranthropus robustus.

Authors:  Matt Sponheimer; Benjamin H Passey; Darryl J de Ruiter; Debbie Guatelli-Steinberg; Thure E Cerling; Julia A Lee-Thorp
Journal:  Science       Date:  2006-11-10       Impact factor: 47.728

4.  Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

Authors:  F Tajima
Journal:  Genetics       Date:  1989-11       Impact factor: 4.562

5.  Genetic analysis of a complex trait in the Utah Genetic Reference Project: a major locus for PTC taste ability on chromosome 7q and a secondary locus on chromosome 16p.

Authors:  Dennis Drayna; Hilary Coon; Un-Kyung Kim; Tami Elsner; Kevin Cromer; Brith Otterud; Lisa Baird; Andy P Peiffer; Mark Leppert
Journal:  Hum Genet       Date:  2003-03-06       Impact factor: 4.132

Review 6.  Positive natural selection in the human lineage.

Authors:  P C Sabeti; S F Schaffner; B Fry; J Lohmueller; P Varilly; O Shamovsky; A Palma; T S Mikkelsen; D Altshuler; E S Lander
Journal:  Science       Date:  2006-06-16       Impact factor: 47.728

7.  Statistical tests of neutrality of mutations.

Authors:  Y X Fu; W H Li
Journal:  Genetics       Date:  1993-03       Impact factor: 4.562

8.  Population differences in the human functional olfactory repertoire.

Authors:  Yoav Gilad; Doron Lancet
Journal:  Mol Biol Evol       Date:  2003-03       Impact factor: 16.240

9.  Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels.

Authors:  Richa Saxena; Benjamin F Voight; Valeriya Lyssenko; Noël P Burtt; Paul I W de Bakker; Hong Chen; Jeffrey J Roix; Sekar Kathiresan; Joel N Hirschhorn; Mark J Daly; Thomas E Hughes; Leif Groop; David Altshuler; Peter Almgren; Jose C Florez; Joanne Meyer; Kristin Ardlie; Kristina Bengtsson Boström; Bo Isomaa; Guillaume Lettre; Ulf Lindblad; Helen N Lyon; Olle Melander; Christopher Newton-Cheh; Peter Nilsson; Marju Orho-Melander; Lennart Råstam; Elizabeth K Speliotes; Marja-Riitta Taskinen; Tiinamaija Tuomi; Candace Guiducci; Anna Berglund; Joyce Carlson; Lauren Gianniny; Rachel Hackett; Liselotte Hall; Johan Holmkvist; Esa Laurila; Marketa Sjögren; Maria Sterner; Aarti Surti; Margareta Svensson; Malin Svensson; Ryan Tewhey; Brendan Blumenstiel; Melissa Parkin; Matthew Defelice; Rachel Barry; Wendy Brodeur; Jody Camarata; Nancy Chia; Mary Fava; John Gibbons; Bob Handsaker; Claire Healy; Kieu Nguyen; Casey Gates; Carrie Sougnez; Diane Gage; Marcia Nizzari; Stacey B Gabriel; Gung-Wei Chirn; Qicheng Ma; Hemang Parikh; Delwood Richardson; Darrell Ricke; Shaun Purcell
Journal:  Science       Date:  2007-04-26       Impact factor: 47.728

10.  Myosin gene mutation correlates with anatomical changes in the human lineage.

Authors:  Hansell H Stedman; Benjamin W Kozyak; Anthony Nelson; Danielle M Thesier; Leonard T Su; David W Low; Charles R Bridges; Joseph B Shrager; Nancy Minugh-Purvis; Marilyn A Mitchell
Journal:  Nature       Date:  2004-03-25       Impact factor: 49.962

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  56 in total

Review 1.  Recent advances in understanding the role of nutrition in human genome evolution.

Authors:  Kaixiong Ye; Zhenglong Gu
Journal:  Adv Nutr       Date:  2011-11-03       Impact factor: 8.701

2.  Adaptive selection of an incretin gene in Eurasian populations.

Authors:  Chia Lin Chang; James J Cai; Chiening Lo; Jorge Amigo; Jae-Il Park; Sheau Yu Teddy Hsu
Journal:  Genome Res       Date:  2010-10-26       Impact factor: 9.043

Review 3.  Genotype to phenotype: Diet-by-mitochondrial DNA haplotype interactions drive metabolic flexibility and organismal fitness.

Authors:  Wen C Aw; Samuel G Towarnicki; Richard G Melvin; Neil A Youngson; Michael R Garvin; Yifang Hu; Shaun Nielsen; Torsten Thomas; Russell Pickford; Sonia Bustamante; Antón Vila-Sanjurjo; Gordon K Smyth; J William O Ballard
Journal:  PLoS Genet       Date:  2018-11-06       Impact factor: 5.917

Review 4.  Promoting longevity by maintaining metabolic and proliferative homeostasis.

Authors:  Lifen Wang; Jason Karpac; Heinrich Jasper
Journal:  J Exp Biol       Date:  2014-01-01       Impact factor: 3.312

Review 5.  A hierarchy of unhealthy food promotion effects: identifying methodological approaches and knowledge gaps.

Authors:  Bridget Kelly; Lesley King MPsy; Kathy Chapman Mnd; Emma Boyland; Adrian E Bauman; Louise A Baur
Journal:  Am J Public Health       Date:  2015-02-25       Impact factor: 9.308

6.  Differences in arachidonic acid levels and fatty acid desaturase (FADS) gene variants in African Americans and European Americans with diabetes or the metabolic syndrome.

Authors:  Susan Sergeant; Christina E Hugenschmidt; Megan E Rudock; Julie T Ziegler; Priscilla Ivester; Hannah C Ainsworth; Dhananjay Vaidya; L Douglas Case; Carl D Langefeld; Barry I Freedman; Donald W Bowden; Rasika A Mathias; Floyd H Chilton
Journal:  Br J Nutr       Date:  2011-07-04       Impact factor: 3.718

7.  Does diet influence salivary enzyme activities in elephant species?

Authors:  Carolin Boehlke; Sandra Pötschke; Verena Behringer; Christian Hannig; Oliver Zierau
Journal:  J Comp Physiol B       Date:  2016-08-31       Impact factor: 2.200

Review 8.  How interactions with plant chemicals shape insect genomes.

Authors:  Andrew D Gloss; Patrick Abbot; Noah K Whiteman
Journal:  Curr Opin Insect Sci       Date:  2019-09-24       Impact factor: 5.186

Review 9.  Genomic signatures of diet-related shifts during human origins.

Authors:  Courtney C Babbitt; Lisa R Warner; Olivier Fedrigo; Christine E Wall; Gregory A Wray
Journal:  Proc Biol Sci       Date:  2010-12-22       Impact factor: 5.349

10.  Comparative expression analysis of the phosphocreatine circuit in extant primates: Implications for human brain evolution.

Authors:  Adam D Pfefferle; Lisa R Warner; Catrina W Wang; William J Nielsen; Courtney C Babbitt; Olivier Fedrigo; Gregory A Wray
Journal:  J Hum Evol       Date:  2010-12-28       Impact factor: 3.895

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