Literature DB >> 15178761

Selective pressures on the olfactory receptor repertoire since the human-chimpanzee divergence.

Alexander A Gimelbrant1, Helen Skaletsky, Andrew Chess.   

Abstract

The availability of the sequence of the chimpanzee genome provides an opportunity to examine human genes and their chimpanzee orthologs and to analyze selective pressures that have been shaping the olfactory receptor repertoire since the human-chimpanzee divergence. We determined the ratio of nonsynonymous to synonymous changes for each of 186 orthologous pairs and then examined how the distribution of these ratios compares with the distribution expected under neutral drift. Consistent with the diminishing importance of olfaction for these species, we find no evidence for positive selection and we find evidence of weak purifying selection affecting over half of the repertoire.

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Year:  2004        PMID: 15178761      PMCID: PMC428465          DOI: 10.1073/pnas.0401566101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

1.  Construction and analysis of a human-chimpanzee comparative clone map.

Authors:  Asao Fujiyama; Hidemi Watanabe; Atsushi Toyoda; Todd D Taylor; Takehiko Itoh; Shih-Feng Tsai; Hong-Seog Park; Marie-Laure Yaspo; Hans Lehrach; Zhu Chen; Gang Fu; Naruya Saitou; Kazutoyo Osoegawa; Pieter J de Jong; Yumiko Suto; Masahira Hattori; Yoshiyuki Sakaki
Journal:  Science       Date:  2002-01-04       Impact factor: 47.728

2.  BLAT--the BLAST-like alignment tool.

Authors:  W James Kent
Journal:  Genome Res       Date:  2002-04       Impact factor: 9.043

3.  Dichotomy of single-nucleotide polymorphism haplotypes in olfactory receptor genes and pseudogenes.

Authors:  Y Gilad; D Segré; K Skorecki; M W Nachman; D Lancet; D Sharon
Journal:  Nat Genet       Date:  2000-10       Impact factor: 38.330

4.  Evolution of olfactory receptor genes in the human genome.

Authors:  Yoshihito Niimura; Masatoshi Nei
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-24       Impact factor: 11.205

5.  The olfactory receptor gene superfamily of the mouse.

Authors:  Xinmin Zhang; Stuart Firestein
Journal:  Nat Neurosci       Date:  2002-02       Impact factor: 24.884

6.  Genomewide comparison of DNA sequences between humans and chimpanzees.

Authors:  Ingo Ebersberger; Dirk Metzler; Carsten Schwarz; Svante Pääbo
Journal:  Am J Hum Genet       Date:  2002-04-30       Impact factor: 11.025

7.  The complete human olfactory subgenome.

Authors:  G Glusman; I Yanai; I Rubin; D Lancet
Journal:  Genome Res       Date:  2001-05       Impact factor: 9.043

8.  Different evolutionary processes shaped the mouse and human olfactory receptor gene families.

Authors:  Janet M Young; Cynthia Friedman; Eleanor M Williams; Joseph A Ross; Lori Tonnes-Priddy; Barbara J Trask
Journal:  Hum Mol Genet       Date:  2002-03-01       Impact factor: 6.150

9.  Natural selection on the olfactory receptor gene family in humans and chimpanzees.

Authors:  Yoav Gilad; Carlos D Bustamante; Doron Lancet; Svante Pääbo
Journal:  Am J Hum Genet       Date:  2003-08-07       Impact factor: 11.025

10.  Evolutionary deterioration of the vomeronasal pheromone transduction pathway in catarrhine primates.

Authors:  Jianzhi Zhang; David M Webb
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-25       Impact factor: 12.779

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  27 in total

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Authors:  Alejandro Sánchez-Gracia; Julio Rozas
Journal:  Genetics       Date:  2007-02-04       Impact factor: 4.562

2.  SSADH variation in primates: intra- and interspecific data on a gene with a potential role in human cognitive functions.

Authors:  Paola Blasi; Francesca Palmerio; Aurora Aiello; Mariano Rocchi; Patrizia Malaspina; Andrea Novelletto
Journal:  J Mol Evol       Date:  2006-06-17       Impact factor: 2.395

Review 3.  Evolutionary adaptations to dietary changes.

Authors:  F Luca; G H Perry; A Di Rienzo
Journal:  Annu Rev Nutr       Date:  2010-08-21       Impact factor: 11.848

4.  Evolution of functionally diverse alleles associated with PTC bitter taste sensitivity in Africa.

Authors:  Michael C Campbell; Alessia Ranciaro; Alain Froment; Jibril Hirbo; Sabah Omar; Jean-Marie Bodo; Thomas Nyambo; Godfrey Lema; Daniel Zinshteyn; Dennis Drayna; Paul A S Breslin; Sarah A Tishkoff
Journal:  Mol Biol Evol       Date:  2011-11-29       Impact factor: 16.240

5.  A genomics approach to the detection of positive selection in cattle: adaptive evolution of the T-cell and natural killer cell-surface protein CD2.

Authors:  David J Lynn; Abigail R Freeman; Caitriona Murray; Daniel G Bradley
Journal:  Genetics       Date:  2005-03-31       Impact factor: 4.562

6.  Dynamic functional evolution of an odorant receptor for sex-steroid-derived odors in primates.

Authors:  Hanyi Zhuang; Ming-Shan Chien; Hiroaki Matsunami
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-02       Impact factor: 11.205

7.  Evolution of olfactory receptor genes in primates dominated by birth-and-death process.

Authors:  Dong Dong; Guimei He; Shuyi Zhang; Zhaolei Zhang
Journal:  Genome Biol Evol       Date:  2009-08-04       Impact factor: 3.416

8.  Membrane environment imposes unique selection pressures on transmembrane domains of G protein-coupled receptors.

Authors:  Stephanie J Spielman; Claus O Wilke
Journal:  J Mol Evol       Date:  2013-01-26       Impact factor: 2.395

9.  Divergence of T2R chemosensory receptor families in humans, bonobos, and chimpanzees.

Authors:  Christopher M Parry; Alfrun Erkner; Johannes le Coutre
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-04       Impact factor: 11.205

10.  A comparison of reptilian and avian olfactory receptor gene repertoires: species-specific expansion of group gamma genes in birds.

Authors:  Silke S Steiger; Vladimir Y Kuryshev; Marcus C Stensmyr; Bart Kempenaers; Jakob C Mueller
Journal:  BMC Genomics       Date:  2009-09-21       Impact factor: 3.969

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