Literature DB >> 22332091

Recent advances in understanding the role of nutrition in human genome evolution.

Kaixiong Ye1, Zhenglong Gu.   

Abstract

Dietary transitions in human history have been suggested to play important roles in the evolution of mankind. Genetic variations caused by adaptation to diet during human evolution could have important health consequences in current society. The advance of sequencing technologies and the rapid accumulation of genome information provide an unprecedented opportunity to comprehensively characterize genetic variations in human populations and unravel the genetic basis of human evolution. Series of selection detection methods, based on various theoretical models and exploiting different aspects of selection signatures, have been developed. Their applications at the species and population levels have respectively led to the identification of human specific selection events that distinguish human from nonhuman primates and local adaptation events that contribute to human diversity. Scrutiny of candidate genes has revealed paradigms of adaptations to specific nutritional components and genome-wide selection scans have verified the prevalence of diet-related selection events and provided many more candidates awaiting further investigation. Understanding the role of diet in human evolution is fundamental for the development of evidence-based, genome-informed nutritional practices in the era of personal genomics.

Entities:  

Mesh:

Year:  2011        PMID: 22332091      PMCID: PMC3226386          DOI: 10.3945/an.111.001024

Source DB:  PubMed          Journal:  Adv Nutr        ISSN: 2161-8313            Impact factor:   8.701


  93 in total

Review 1.  Estimating F-statistics.

Authors:  B S Weir; W G Hill
Journal:  Annu Rev Genet       Date:  2002-06-11       Impact factor: 16.830

2.  Using environmental correlations to identify loci underlying local adaptation.

Authors:  Graham Coop; David Witonsky; Anna Di Rienzo; Jonathan K Pritchard
Journal:  Genetics       Date:  2010-06-01       Impact factor: 4.562

3.  Geographically separate increases in the frequency of the derived ADH1B*47His allele in eastern and western Asia.

Authors:  Hui Li; Namita Mukherjee; Usha Soundararajan; Zsanett Tarnok; Csaba Barta; Shagufta Khaliq; Aisha Mohyuddin; Sylvester L B Kajuna; S Qasim Mehdi; Judith R Kidd; Kenneth K Kidd
Journal:  Am J Hum Genet       Date:  2007-08-24       Impact factor: 11.025

4.  Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

Authors:  F Tajima
Journal:  Genetics       Date:  1989-11       Impact factor: 4.562

5.  Statistical tests of neutrality of mutations.

Authors:  Y X Fu; W H Li
Journal:  Genetics       Date:  1993-03       Impact factor: 4.562

6.  Diet and the evolution of human amylase gene copy number variation.

Authors:  George H Perry; Nathaniel J Dominy; Katrina G Claw; Arthur S Lee; Heike Fiegler; Richard Redon; John Werner; Fernando A Villanea; Joanna L Mountain; Rajeev Misra; Nigel P Carter; Charles Lee; Anne C Stone
Journal:  Nat Genet       Date:  2007-09-09       Impact factor: 38.330

7.  Different selective pressures shape the molecular evolution of color vision in chimpanzee and human populations.

Authors:  Brian C Verrelli; Cecil M Lewis; Anne C Stone; George H Perry
Journal:  Mol Biol Evol       Date:  2008-10-01       Impact factor: 16.240

8.  Constructing genomic maps of positive selection in humans: where do we go from here?

Authors:  Joshua M Akey
Journal:  Genome Res       Date:  2009-05       Impact factor: 9.043

9.  Adaptations to climate-mediated selective pressures in humans.

Authors:  Angela M Hancock; David B Witonsky; Gorka Alkorta-Aranburu; Cynthia M Beall; Amha Gebremedhin; Rem Sukernik; Gerd Utermann; Jonathan K Pritchard; Graham Coop; Anna Di Rienzo
Journal:  PLoS Genet       Date:  2011-04-21       Impact factor: 5.917

10.  The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation.

Authors:  Jonathan K Pritchard; Joseph K Pickrell; Graham Coop
Journal:  Curr Biol       Date:  2010-02-23       Impact factor: 10.834

View more
  11 in total

Review 1.  Inferring evolutionary dynamics of mutation rates through the lens of mutation spectrum variation.

Authors:  Jedidiah Carlson; William S DeWitt; Kelley Harris
Journal:  Curr Opin Genet Dev       Date:  2020-06-30       Impact factor: 5.578

Review 2.  Human risk of diseases associated with red meat intake: Analysis of current theories and proposed role for metabolic incorporation of a non-human sialic acid.

Authors:  Frederico Alisson-Silva; Kunio Kawanishi; Ajit Varki
Journal:  Mol Aspects Med       Date:  2016-07-12

3.  Profiling of Human Molecular Pathways Affected by Retrotransposons at the Level of Regulation by Transcription Factor Proteins.

Authors:  Daniil Nikitin; Dmitry Penzar; Andrew Garazha; Maxim Sorokin; Victor Tkachev; Nicolas Borisov; Alexander Poltorak; Vladimir Prassolov; Anton A Buzdin
Journal:  Front Immunol       Date:  2018-01-30       Impact factor: 7.561

4.  Ancestors' dietary patterns and environments could drive positive selection in genes involved in micronutrient metabolism-the case of cofactor transporters.

Authors:  Silvia Parolo; Sébastien Lacroix; Jim Kaput; Marie-Pier Scott-Boyer
Journal:  Genes Nutr       Date:  2017-10-04       Impact factor: 5.523

5.  A Regionalized Genome-Based Mexican Diet Improves Anthropometric and Metabolic Parameters in Subjects at Risk for Obesity-Related Chronic Diseases.

Authors:  Claudia Ojeda-Granados; Arturo Panduro; Ingrid Rivera-Iñiguez; Maricruz Sepúlveda-Villegas; Sonia Roman
Journal:  Nutrients       Date:  2020-02-28       Impact factor: 5.717

6.  Human population dynamics and Yersinia pestis in ancient northeast Asia.

Authors:  Gülşah Merve Kılınç; Natalija Kashuba; Dilek Koptekin; Nora Bergfeldt; Handan Melike Dönertaş; Ricardo Rodríguez-Varela; Dmitrij Shergin; Grigorij Ivanov; Dmitrii Kichigin; Kjunnej Pestereva; Denis Volkov; Pavel Mandryka; Artur Kharinskii; Alexey Tishkin; Evgenij Ineshin; Evgeniy Kovychev; Aleksandr Stepanov; Love Dalén; Torsten Günther; Emrah Kırdök; Mattias Jakobsson; Mehmet Somel; Maja Krzewińska; Jan Storå; Anders Götherström
Journal:  Sci Adv       Date:  2021-01-06       Impact factor: 14.136

7.  Positive selection acts on regulatory genetic variants in populations of European ancestry that affect ALDH2 gene expression.

Authors:  Helmut Schaschl; Tobias Göllner; David L Morris
Journal:  Sci Rep       Date:  2022-03-16       Impact factor: 4.379

8.  Ortholog genes from cactophilic Drosophila provide insight into human adaptation to hallucinogenic cacti.

Authors:  Julian Padró; Diego N De Panis; Pierre Luisi; Hernan Dopazo; Sergio Szajnman; Esteban Hasson; Ignacio M Soto
Journal:  Sci Rep       Date:  2022-08-01       Impact factor: 4.996

9.  Human expression QTLs are enriched in signals of environmental adaptation.

Authors:  Kaixiong Ye; Jian Lu; Srilakshmi Madhura Raj; Zhenglong Gu
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

10.  Natural selection on HFE in Asian populations contributes to enhanced non-heme iron absorption.

Authors:  Kaixiong Ye; Chang Cao; Xu Lin; Kimberly O O'Brien; Zhenglong Gu
Journal:  BMC Genet       Date:  2015-06-10       Impact factor: 2.797

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.