Literature DB >> 20418400

Genome sequences of Oceanicola granulosus HTCC2516(T) and Oceanicola batsensis HTCC2597(TDelta).

J Cameron Thrash1, Jang-Cheon Cho, Kevin L Vergin, Stephen J Giovannoni.   

Abstract

Genome sequences from the prolific Roseobacter clade in the Alphaproteobacteria are beginning to reveal the genetic basis for the diverse lifestyles of these organisms. Here we present the genome sequences of Oceanicola granulosus HTCC2516(T) and Oceanicola batsensis HTCC2597(T), two marine Roseobacter species isolated from the Sargasso Sea using dilution-to-extinction culturing, whose genomes encode for significant differences in metabolic potential.

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Year:  2010        PMID： 20418400      PMCID： PMC2897662          DOI： 10.1128/JB.00412-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates.

Authors:  Stephanie A Connon; Stephen J Giovannoni
Journal:  Appl Environ Microbiol       Date:  2002-08       Impact factor: 4.792

2.  Oceanicola granulosus gen. nov., sp. nov. and Oceanicola batsensis sp. nov., poly-beta-hydroxybutyrate-producing marine bacteria in the order 'Rhodobacterales'.

Authors:  Jang-Cheon Cho; Stephen J Giovannoni
Journal:  Int J Syst Evol Microbiol       Date:  2004-07       Impact factor: 2.747

3.  A robust species tree for the alphaproteobacteria.

Authors:  Kelly P Williams; Bruno W Sobral; Allan W Dickerman
Journal:  J Bacteriol       Date:  2007-05-04       Impact factor: 3.490

Review 4.  Diversity, ecology, and genomics of the Roseobacter clade: a short overview.

Authors:  Thorsten Brinkhoff; Helge-Ansgar Giebel; Meinhard Simon
Journal:  Arch Microbiol       Date:  2008-02-06       Impact factor: 2.552

5.  Genome characteristics of a generalist marine bacterial lineage.

Authors:  Ryan J Newton; Laura E Griffin; Kathy M Bowles; Christof Meile; Scott Gifford; Carrie E Givens; Erinn C Howard; Eric King; Clinton A Oakley; Chris R Reisch; Johanna M Rinta-Kanto; Shalabh Sharma; Shulei Sun; Vanessa Varaljay; Maria Vila-Costa; Jason R Westrich; Mary Ann Moran
Journal:  ISME J       Date:  2010-01-14       Impact factor: 10.302

6.  Parvularcula bermudensis gen. nov., sp. nov., a marine bacterium that forms a deep branch in the alpha-Proteobacteria.

Authors:  Jang-Cheon Cho; Stephen J Giovannoni
Journal:  Int J Syst Evol Microbiol       Date:  2003-07       Impact factor: 2.747

Review 7.  Polyhydroxyalkanoates: an overview.

Authors:  C S K Reddy; R Ghai; V C Kalia
Journal:  Bioresour Technol       Date:  2003-04       Impact factor: 9.642

8.  Stability of the cbb3-type cytochrome oxidase requires specific CcoQ-CcoP interactions.

Authors:  Annette Peters; Carmen Kulajta; Grzegorz Pawlik; Fevzi Daldal; Hans-Georg Koch
Journal:  J Bacteriol       Date:  2008-06-13       Impact factor: 3.490

Review 9.  Cytochrome cbb(3) oxidase and bacterial microaerobic metabolism.

Authors:  R S Pitcher; T Brittain; N J Watmough
Journal:  Biochem Soc Trans       Date:  2002-08       Impact factor: 5.407

10.  IMG/M: a data management and analysis system for metagenomes.

Authors:  Victor M Markowitz; Natalia N Ivanova; Ernest Szeto; Krishna Palaniappan; Ken Chu; Daniel Dalevi; I-Min A Chen; Yuri Grechkin; Inna Dubchak; Iain Anderson; Athanasios Lykidis; Konstantinos Mavromatis; Philip Hugenholtz; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2007-10-11       Impact factor: 16.971
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  8 in total

1.  Genome sequences of Pelagibaca bermudensis HTCC2601T and Maritimibacter alkaliphilus HTCC2654T, the type strains of two marine Roseobacter genera.

Authors:  J Cameron Thrash; Jang-Cheon Cho; Steve Ferriera; Justin Johnson; Kevin L Vergin; Stephen J Giovannoni
Journal:  J Bacteriol       Date:  2010-08-20       Impact factor: 3.490

2.  Genome sequence of Phaeobacter caeruleus type strain (DSM 24564(T)), a surface-associated member of the marine Roseobacter clade.

Authors:  Paul G Beyersmann; Olga Chertkov; Jörn Petersen; Anne Fiebig; Amy Chen; Amrita Pati; Natalia Ivanova; Alla Lapidus; Lynne A Goodwin; Patrick Chain; John C Detter; Manfred Rohde; Sabine Gronow; Nikos C Kyrpides; Tanja Woyke; Meinhard Simon; Markus Göker; Hans-Peter Klenk; Thorsten Brinkhoff
Journal:  Stand Genomic Sci       Date:  2013-07-30

3.  Draft genome sequence of the xylan-degrading marine bacterium strain S124, representing a novel species of the genus Oceanicola.

Authors:  Young-Kyung Kwon; Jennifer Jooyoun Kim; Ji Hyung Kim; Seon-Mi Jeon; Bo-Ram Ye; Jiyi Jang; Soo-Jin Heo; Se Chang Park; Do-Hyung Kang; Chulhong Oh
Journal:  J Bacteriol       Date:  2012-11       Impact factor: 3.490

4.  High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade.

Authors:  Joseph A Christie-Oleza; Guylaine Miotello; Jean Armengaud
Journal:  BMC Genomics       Date:  2012-02-15       Impact factor: 3.969

5.  Genome sequence of Phaeobacter daeponensis type strain (DSM 23529(T)), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis.

Authors:  Marco Dogs; Hazuki Teshima; Jörn Petersen; Anne Fiebig; Olga Chertkov; Hajnalka Dalingault; Amy Chen; Amrita Pati; Lynne A Goodwin; Patrick Chain; John C Detter; Natalia Ivanova; Alla Lapidus; Manfred Rohde; Sabine Gronow; Nikos C Kyrpides; Tanja Woyke; Meinhard Simon; Markus Göker; Hans-Peter Klenk; Thorsten Brinkhoff
Journal:  Stand Genomic Sci       Date:  2013-10-03

6.  Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566(T.).

Authors:  Heike M Freese; Hajnalka Dalingault; Jörn Petersen; Silke Pradella; Karen Davenport; Hazuki Teshima; Amy Chen; Amrita Pati; Natalia Ivanova; Lynne A Goodwin; Patrick Chain; John C Detter; Manfred Rohde; Sabine Gronow; Nikos C Kyrpides; Tanja Woyke; Thorsten Brinkhoff; Markus Göker; Jörg Overmann; Hans-Peter Klenk
Journal:  Stand Genomic Sci       Date:  2013-07-30

7.  Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment.

Authors:  Sven Breider; Hazuki Teshima; Jörn Petersen; Olga Chertkov; Hajnalka Dalingault; Amy Chen; Amrita Pati; Natalia Ivanova; Alla Lapidus; Lynne A Goodwin; Patrick Chain; John C Detter; Manfred Rohde; Brian J Tindall; Nikos C Kyrpides; Tanja Woyke; Meinhard Simon; Markus Göker; Hans-Peter Klenk; Thorsten Brinkhoff
Journal:  Stand Genomic Sci       Date:  2014-01-25

8.  Complete genome sequence of the bacteriochlorophyll a-containing Roseibacterium elongatum type strain (DSM 19469(T)), a representative of the Roseobacter group isolated from Australian coast sand.

Authors:  Thomas Riedel; Anne Fiebig; Markus Göker; Hans-Peter Klenk
Journal:  Stand Genomic Sci       Date:  2014-03-28
  8 in total

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