Literature DB >> 20729358

Genome sequences of Pelagibaca bermudensis HTCC2601T and Maritimibacter alkaliphilus HTCC2654T, the type strains of two marine Roseobacter genera.

J Cameron Thrash1, Jang-Cheon Cho, Steve Ferriera, Justin Johnson, Kevin L Vergin, Stephen J Giovannoni.   

Abstract

Pelagibaca bermudensis HTCC2601(T) and Maritimibacter alkaliphilus HTCC2654(T) represent two marine genera in the globally significant Roseobacter clade of the Alphaproteobacteria. Here, we present the genome sequences of these organisms, isolated from the Sargasso Sea using dilution-to-extinction culturing, which offer insight into the genetic basis for the metabolic and ecological diversity of this important group.

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Year:  2010        PMID： 20729358      PMCID： PMC2950497          DOI： 10.1128/JB.00873-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  16 in total

Review 1.  Alkaliphiles: some applications of their products for biotechnology.

Authors:  K Horikoshi
Journal:  Microbiol Mol Biol Rev       Date:  1999-12       Impact factor: 11.056

Review 2.  Overview of the marine roseobacter lineage.

Authors:  Alison Buchan; José M González; Mary Ann Moran
Journal:  Appl Environ Microbiol       Date:  2005-10       Impact factor: 4.792

3.  Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site.

Authors:  Ulrich Stingl; Harry James Tripp; Stephen J Giovannoni
Journal:  ISME J       Date:  2007-07-05       Impact factor: 10.302

Review 4.  Diversity, ecology, and genomics of the Roseobacter clade: a short overview.

Authors:  Thorsten Brinkhoff; Helge-Ansgar Giebel; Meinhard Simon
Journal:  Arch Microbiol       Date:  2008-02-06       Impact factor: 2.552

5.  Genome characteristics of a generalist marine bacterial lineage.

Authors:  Ryan J Newton; Laura E Griffin; Kathy M Bowles; Christof Meile; Scott Gifford; Carrie E Givens; Erinn C Howard; Eric King; Clinton A Oakley; Chris R Reisch; Johanna M Rinta-Kanto; Shalabh Sharma; Shulei Sun; Vanessa Varaljay; Maria Vila-Costa; Jason R Westrich; Mary Ann Moran
Journal:  ISME J       Date:  2010-01-14       Impact factor: 10.302

6.  Genome sequences of Oceanicola granulosus HTCC2516(T) and Oceanicola batsensis HTCC2597(TDelta).

Authors:  J Cameron Thrash; Jang-Cheon Cho; Kevin L Vergin; Stephen J Giovannoni
Journal:  J Bacteriol       Date:  2010-04-23       Impact factor: 3.490

7.  Cloning and sequencing of a novel Na+/H+ antiporter gene from Pseudomonas aeruginosa.

Authors:  J Utsugi; K Inaba; T Kuroda; M Tsuda; T Tsuchiya
Journal:  Biochim Biophys Acta       Date:  1998-07-09

8.  Maritimibacter alkaliphilus gen. nov., sp. nov., a genome-sequenced marine bacterium of the Roseobacter clade in the order Rhodobacterales.

Authors:  Kiyoung Lee; Yoe-Jin Choo; Stephen J Giovannoni; Jang-Cheon Cho
Journal:  Int J Syst Evol Microbiol       Date:  2007-07       Impact factor: 2.747

9.  Three putative cation/proton antiporters from the soda lake alkaliphile Alkalimonas amylolytica N10 complement an alkali-sensitive Escherichia coli mutant.

Authors:  Yi Wei; Jun Liu; Yanhe Ma; Terry A Krulwich
Journal:  Microbiology       Date:  2007-07       Impact factor: 2.777

10.  IMG/M: a data management and analysis system for metagenomes.

Authors:  Victor M Markowitz; Natalia N Ivanova; Ernest Szeto; Krishna Palaniappan; Ken Chu; Daniel Dalevi; I-Min A Chen; Yuri Grechkin; Inna Dubchak; Iain Anderson; Athanasios Lykidis; Konstantinos Mavromatis; Philip Hugenholtz; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2007-10-11       Impact factor: 16.971
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  6 in total

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Authors:  Joseph A Christie-Oleza; Guylaine Miotello; Jean Armengaud
Journal:  BMC Genomics       Date:  2012-02-15       Impact factor: 3.969

2.  Recoding of the stop codon UGA to glycine by a BD1-5/SN-2 bacterium and niche partitioning between Alpha- and Gammaproteobacteria in a tidal sediment microbial community naturally selected in a laboratory chemostat.

Authors:  Anna Hanke; Emmo Hamann; Ritin Sharma; Jeanine S Geelhoed; Theresa Hargesheimer; Beate Kraft; Volker Meyer; Sabine Lenk; Harald Osmers; Rong Wu; Kofi Makinwa; Robert L Hettich; Jillian F Banfield; Halina E Tegetmeyer; Marc Strous
Journal:  Front Microbiol       Date:  2014-05-16       Impact factor: 5.640

3.  Genomic, physiologic, and proteomic insights into metabolic versatility in Roseobacter clade bacteria isolated from deep-sea water.

Authors:  Kai Tang; Yujie Yang; Dan Lin; Shuhui Li; Wenchu Zhou; Yu Han; Keshao Liu; Nianzhi Jiao
Journal:  Sci Rep       Date:  2016-10-20       Impact factor: 4.379

4.  Experimental identification and in silico prediction of bacterivory in green algae.

Authors:  Nicholas A Bock; Sophie Charvet; John Burns; Yangtsho Gyaltshen; Andrey Rozenberg; Solange Duhamel; Eunsoo Kim
Journal:  ISME J       Date:  2021-03-02       Impact factor: 10.302

5.  Ubiquity and diversity of heterotrophic bacterial nasA genes in diverse marine environments.

Authors:  Xuexia Jiang; Hongyue Dang; Nianzhi Jiao
Journal:  PLoS One       Date:  2015-02-03       Impact factor: 3.240

6.  Pelagibaca bermudensis promotes biofuel competence of Tetraselmis striata in a broad range of abiotic stressors: dynamics of quorum-sensing precursors and strategic improvement in lipid productivity.

Authors:  Shailesh Kumar Patidar; Sae-Hee Kim; Jin Ho Kim; Jungsoo Park; Bum Soo Park; Myung-Soo Han
Journal:  Biotechnol Biofuels       Date:  2018-04-07       Impact factor: 6.040
  6 in total

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