Literature DB >> 20405902

Glycine and its hydrated complexes: a matrix isolation infrared study.

Clifton Espinoza1, Jan Szczepanski, Martin Vala, Nick C Polfer.   

Abstract

The hydration of glycine is investigated by comparing the structures of bare glycine to its hydrated complexes, glycine.H(2)O and glycine.(H(2)O)(2). The Fourier transform infrared spectra of glycine and glycine.water complexes, embedded in Ar matrices at 12 K, have been recorded and the results were compared to density functional theory (DFT) calculations. An initial comparison of the experimental spectra was made to the harmonic infrared spectra of putative structures calculated at the MPW1PW91/6-311++G(d,p) level of theory. The results suggest that bare glycine adopts a C(s) symmetry structure (G-1), where the hydrogens of the amino NH(2) hydrogen-bond intramolecularly with the carboxylic acid C horizontal lineO oxygen. Also observed as minor constituents are the next two lowest-energy structures, one in which the carboxylic acid (O-)H group hydrogen-bonds to the amino NH(2) group (G-2), and the other where intramolecular hydrogen bonding occurs between the NH(2) and the carboxylic acid O(-H) groups (G-3). The abundances of these structures are estimated at 84%, 9% and 8%, respectively. The least favored structure, G-3, can be eliminated by annealing the matrix to 35 K. Addition of the first water molecule to G-1 takes place at the carboxylic acid group, with simultaneous hydrogen bonding of the water molecule to the carboxylic acid (C=)O and (O-)H. The results are consistent with the predominance of this structure, although there is evidence for a small amount of a hydrated G-2 structure. Addition of the second water molecule is less definitive, as only a small number of intense infrared modes can be unambiguously assigned to glycine.(H(2)O)(2). Anharmonic frequency calculations based on second-order vibrational perturbation theory have also been carried out. It is shown that such calculations can generate improved estimates (i.e., approximately 2%) of the experimental frequencies for glycine and glycine.H(2)O, provided that the potential energy surfaces are modeled with high-level ab initio approaches (MP2/aug-cc-pVDZ).

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Year:  2010        PMID: 20405902     DOI: 10.1021/jp1014115

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  7 in total

1.  DFT and MP2 investigations of L-proline and its hydrated complexes.

Authors:  Xiao-Jun Li; Zhi-Jian Zhong; Hai-Zhen Wu
Journal:  J Mol Model       Date:  2011-01-25       Impact factor: 1.810

2.  Raman spectra of long chain hydrocarbons: anharmonic calculations, experiment and implications for imaging of biomembranes.

Authors:  Jiří Šebek; Liat Pele; Eric O Potma; R Benny Gerber
Journal:  Phys Chem Chem Phys       Date:  2011-06-14       Impact factor: 3.676

3.  Different proton transfer channels for the transformation of zwitterionic alanine-(H₂O)(n=2-4) to nonzwitterionic alanine-(H₂O)(n=2-4): a density functional theory study.

Authors:  Animesh K Ojha; Snehasis Bhunia
Journal:  J Mol Model       Date:  2014-02-28       Impact factor: 1.810

4.  Identification of Serine Conformers by Matrix-Isolation IR Spectroscopy Aided by Near-Infrared Laser-Induced Conformational Change, 2D Correlation Analysis, and Quantum Mechanical Anharmonic Computations.

Authors:  Eszter E Najbauer; Gábor Bazsó; Rui Apóstolo; Rui Fausto; Malgorzata Biczysko; Vincenzo Barone; György Tarczay
Journal:  J Phys Chem B       Date:  2015-08-05       Impact factor: 2.991

5.  Fully anharmonic IR and Raman spectra of medium-size molecular systems: accuracy and interpretation.

Authors:  Vincenzo Barone; Malgorzata Biczysko; Julien Bloino
Journal:  Phys Chem Chem Phys       Date:  2014-02-07       Impact factor: 3.676

6.  Accurate structure, thermodynamic and spectroscopic parameters from CC and CC/DFT schemes: the challenge of the conformational equilibrium in glycine.

Authors:  Vincenzo Barone; Malgorzata Biczysko; Julien Bloino; Cristina Puzzarini
Journal:  Phys Chem Chem Phys       Date:  2013-04-19       Impact factor: 3.676

7.  First-principles data set of 45,892 isolated and cation-coordinated conformers of 20 proteinogenic amino acids.

Authors:  Matti Ropo; Markus Schneider; Carsten Baldauf; Volker Blum
Journal:  Sci Data       Date:  2016-02-16       Impact factor: 6.444

  7 in total

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