Literature DB >> 20366291

Role of spatial averaging in the precision of gene expression patterns.

Thorsten Erdmann1, Martin Howard, Pieter Rein ten Wolde.   

Abstract

During embryonic development, differentiating cells respond via gene expression to positional cues from morphogen gradients. While gene expression is often highly erratic, embryonic development is precise. We show by theory and simulations that diffusion of the expressed protein can enhance the precision of its expression domain. While diffusion lessens the sharpness of the expression boundary, it also reduces super-Poissonian noise by washing out bursts of gene expression. Balancing these effects yields an optimal diffusion constant maximizing the precision of the expression domain.

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Year:  2009        PMID: 20366291     DOI: 10.1103/PhysRevLett.103.258101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  33 in total

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Authors:  Mark B Flegg; S Jonathan Chapman; Radek Erban
Journal:  J R Soc Interface       Date:  2011-10-19       Impact factor: 4.118

2.  Shaping a morphogen gradient for positional precision.

Authors:  Feng He; Timothy E Saunders; Ying Wen; David Cheung; Renjie Jiao; Pieter Rein ten Wolde; Martin Howard; Jun Ma
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

3.  Evaluating the Drosophila Bicoid morphogen gradient system through dissecting the noise in transcriptional bursts.

Authors:  Feng He; Jie Ren; Wei Wang; Jun Ma
Journal:  Bioinformatics       Date:  2012-02-02       Impact factor: 6.937

4.  Limits to the precision of gradient sensing with spatial communication and temporal integration.

Authors:  Andrew Mugler; Andre Levchenko; Ilya Nemenman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-20       Impact factor: 11.205

5.  Positional information, in bits.

Authors:  Julien O Dubuis; Gasper Tkacik; Eric F Wieschaus; Thomas Gregor; William Bialek
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-02       Impact factor: 11.205

6.  Maternal origins of developmental reproducibility.

Authors:  Mariela D Petkova; Shawn C Little; Feng Liu; Thomas Gregor
Journal:  Curr Biol       Date:  2014-05-22       Impact factor: 10.834

7.  Precision of sensing cell length via concentration gradients.

Authors:  Filipe Tostevin
Journal:  Biophys J       Date:  2011-01-19       Impact factor: 4.033

8.  Morphogen gradient formation and action: insights from studying Bicoid protein degradation.

Authors:  Junbo Liu; Feng He; Jun Ma
Journal:  Fly (Austin)       Date:  2011-07-01       Impact factor: 2.160

9.  Spatial partitioning improves the reliability of biochemical signaling.

Authors:  Andrew Mugler; Filipe Tostevin; Pieter Rein ten Wolde
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-25       Impact factor: 11.205

10.  The Berg-Purcell limit revisited.

Authors:  Kazunari Kaizu; Wiet de Ronde; Joris Paijmans; Koichi Takahashi; Filipe Tostevin; Pieter Rein ten Wolde
Journal:  Biophys J       Date:  2014-02-18       Impact factor: 4.033

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