Literature DB >> 20351898

Medical temporal-knowledge discovery via temporal abstraction.

Robert Moskovitch1, Yuval Shahar.   

Abstract

Medical knowledge includes frequently occurring temporal patterns in longitudinal patient records. These patterns are not easily detectable by human clinicians. Current knowledge could be extended by automated temporal data mining. However, multivariate time-oriented data are often present at various levels of abstraction and at multiple temporal granularities, requiring a transformation into a more abstract, yet uniform dimension suitable for mining. Temporal abstraction (of both the time and value dimensions) can transform multiple types of point-based data into a meaningful, time-interval-based data representation, in which significant, interval-based temporal patterns can be discovered. We introduce a modular, fast time-interval mining method, KarmaLego, which exploits the transitivity inherent in temporal relations. We demonstrate the usefulness of KarmaLego in finding meaningful temporal patterns within a set of records of diabetic patients; several patterns seem to have a different frequency depending on gender. We also suggest additional uses of the discovered patterns for temporal clustering of the mined population and for classifying multivariate time series.

Entities:  

Mesh:

Year:  2009        PMID: 20351898      PMCID: PMC2815492     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  1 in total

1.  Temporal abstraction for feature extraction: a comparative case study in prediction from intensive care monitoring data.

Authors:  Marion Verduijn; Lucia Sacchi; Niels Peek; Riccardo Bellazzi; Evert de Jonge; Bas A J M de Mol
Journal:  Artif Intell Med       Date:  2007-08-14       Impact factor: 5.326

  1 in total
  29 in total

1.  A Pattern Mining Approach for Classifying Multivariate Temporal Data.

Authors:  Iyad Batal; Hamed Valizadegan; Gregory F Cooper; Milos Hauskrecht
Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)       Date:  2011-11-12

2.  Mining Recent Temporal Patterns for Event Detection in Multivariate Time Series Data.

Authors:  Iyad Batal; Dmitriy Fradkin; James Harrison; Fabian Moerchen; Milos Hauskrecht
Journal:  KDD       Date:  2012

3.  Modeling asynchronous event sequences with RNNs.

Authors:  Stephen Wu; Sijia Liu; Sunghwan Sohn; Sungrim Moon; Chung-Il Wi; Young Juhn; Hongfang Liu
Journal:  J Biomed Inform       Date:  2018-06-05       Impact factor: 6.317

4.  Comparing lagged linear correlation, lagged regression, Granger causality, and vector autoregression for uncovering associations in EHR data.

Authors:  Matthew E Levine; David J Albers; George Hripcsak
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

5.  An Efficient Pattern Mining Approach for Event Detection in Multivariate Temporal Data.

Authors:  Iyad Batal; Gregory Cooper; Dmitriy Fradkin; James Harrison; Fabian Moerchen; Milos Hauskrecht
Journal:  Knowl Inf Syst       Date:  2015-01-21       Impact factor: 2.822

6.  Patient ranking with temporally annotated data.

Authors:  Luca Bonomi; Xiaoqian Jiang
Journal:  J Biomed Inform       Date:  2017-12-19       Impact factor: 6.317

7.  Development of an automated phenotyping algorithm for hepatorenal syndrome.

Authors:  Jejo D Koola; Sharon E Davis; Omar Al-Nimri; Sharidan K Parr; Daniel Fabbri; Bradley A Malin; Samuel B Ho; Michael E Matheny
Journal:  J Biomed Inform       Date:  2018-03-09       Impact factor: 6.317

8.  Exploiting time in electronic health record correlations.

Authors:  George Hripcsak; David J Albers; Adler Perotte
Journal:  J Am Med Inform Assoc       Date:  2011-11-23       Impact factor: 4.497

9.  A Graph Based Methodology for Temporal Signature Identification from HER.

Authors:  Fei Wang; Chuanren Liu; Yajuan Wang; Jianying Hu; Guoqiang Yu
Journal:  AMIA Annu Symp Proc       Date:  2015-11-05

Review 10.  Facilitating biomedical researchers' interrogation of electronic health record data: Ideas from outside of biomedical informatics.

Authors:  Gregory W Hruby; Konstantina Matsoukas; James J Cimino; Chunhua Weng
Journal:  J Biomed Inform       Date:  2016-03-10       Impact factor: 6.317

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