Literature DB >> 20336827

Particle-based methods for multiscale modeling of blood flow in the circulation and in devices: challenges and future directions. Sixth International Bio-Fluid Mechanics Symposium and Workshop March 28-30, 2008 Pasadena, California.

Takami Yamaguchi1, Takuji Ishikawa, Y Imai, N Matsuki, Mikhail Xenos, Yuefan Deng, Danny Bluestein.   

Abstract

A major computational challenge for a multiscale modeling is the coupling of disparate length and timescales between molecular mechanics and macroscopic transport, spanning the spatial and temporal scales characterizing the complex processes taking place in flow-induced blood clotting. Flow and pressure effects on a cell-like platelet can be well represented by a continuum mechanics model down to the order of the micrometer level. However, the molecular effects of adhesion/aggregation bonds are on the order of nanometer. A successful multiscale model of platelet response to flow stresses in devices and the ensuing clotting responses should be able to characterize the clotting reactions and their interactions with the flow. This paper attempts to describe a few of the computational methods that were developed in recent years and became available to researchers in the field. They differ from traditional approaches that dominate the field by expanding on prevailing continuum-based approaches, or by completely departing from them, yielding an expanding toolkit that may facilitate further elucidation of the underlying mechanisms of blood flow and the cellular response to it. We offer a paradigm shift by adopting a multidisciplinary approach with fluid dynamics simulations coupled to biophysical and biochemical transport.

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Year:  2010        PMID: 20336827      PMCID: PMC2862251          DOI: 10.1007/s10439-010-9904-x

Source DB:  PubMed          Journal:  Ann Biomed Eng        ISSN: 0090-6964            Impact factor:   3.934


  28 in total

1.  Thermodynamically consistent mesoscopic fluid particle model.

Authors:  M Serrano; P Español
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-09-24

2.  A discrete-particle model of blood dynamics in capillary vessels.

Authors:  Witold Dzwinel; Krzysztof Boryczko; David A Yuen
Journal:  J Colloid Interface Sci       Date:  2003-02-01       Impact factor: 8.128

3.  Numerical simulation of the flow-induced deformation of red blood cells.

Authors:  C Pozrikidis
Journal:  Ann Biomed Eng       Date:  2003-11       Impact factor: 3.934

4.  Mesoscopic dynamics of colloids simulated with dissipative particle dynamics and fluid particle model.

Authors:  Witold Dzwinel; David A Yuen; Krzysztof Boryczko
Journal:  J Mol Model       Date:  2002-01       Impact factor: 1.810

Review 5.  Ordered porous materials for emerging applications.

Authors:  Mark E Davis
Journal:  Nature       Date:  2002-06-20       Impact factor: 49.962

6.  Modeling fibrin aggregation in blood flow with discrete-particles.

Authors:  Krzysztof Boryczko; Witold Dzwinel; David A Yuen
Journal:  Comput Methods Programs Biomed       Date:  2004-09       Impact factor: 5.428

7.  Modeling the flow of dense suspensions of deformable particles in three dimensions.

Authors:  Michael M Dupin; Ian Halliday; Chris M Care; Lyuba Alboul; Lance L Munn
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-06-27

8.  A comparative study between dissipative particle dynamics and molecular dynamics for simple- and complex-geometry flows.

Authors:  Eric E Keaveny; Igor V Pivkin; Martin Maxey; George Em Karniadakis
Journal:  J Chem Phys       Date:  2005-09-08       Impact factor: 3.488

9.  Transport processes in biomedical systems: a roadmap for future research directions.

Authors:  Geert W Schmid-Schönbein; Kenneth R Diller
Journal:  Ann Biomed Eng       Date:  2005-09       Impact factor: 3.934

10.  Interactions of blood cell constituents: experimental investigation and computational modeling by discrete particle dynamics algorithm.

Authors:  N Filipovic; D Ravnic; M Kojic; S J Mentzer; S Haber; A Tsuda
Journal:  Microvasc Res       Date:  2007-10-12       Impact factor: 3.514

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  18 in total

Review 1.  The use of computational fluid dynamics in the development of ventricular assist devices.

Authors:  Katharine H Fraser; M Ertan Taskin; Bartley P Griffith; Zhongjun J Wu
Journal:  Med Eng Phys       Date:  2010-11-13       Impact factor: 2.242

2.  A Multiple Time Stepping Algorithm for Efficient Multiscale Modeling of Platelets Flowing in Blood Plasma.

Authors:  Peng Zhang; Na Zhang; Yuefan Deng; Danny Bluestein
Journal:  J Comput Phys       Date:  2015-03-01       Impact factor: 3.553

3.  Coarse-grained molecular dynamics simulations of fibrin polymerization: effects of thrombin concentration on fibrin clot structure.

Authors:  Sumith Yesudasan; Xianqiao Wang; Rodney D Averett
Journal:  J Mol Model       Date:  2018-04-05       Impact factor: 1.810

4.  Fibrin polymerization simulation using a reactive dissipative particle dynamics method.

Authors:  Sumith Yesudasan; Xianqiao Wang; Rodney D Averett
Journal:  Biomech Model Mechanobiol       Date:  2018-05-23

5.  Self-consistent description of electrokinetic phenomena in particle-based simulations.

Authors:  Juan P Hernández-Ortiz; Juan J de Pablo
Journal:  J Chem Phys       Date:  2015-07-07       Impact factor: 3.488

6.  Continuum- and particle-based modeling of shapes and dynamics of red blood cells in health and disease.

Authors:  Xuejin Li; Petia M Vlahovska; George Em Karniadakis
Journal:  Soft Matter       Date:  2013-01-07       Impact factor: 3.679

7.  A multiscale biomechanical model of platelets: Correlating with in-vitro results.

Authors:  Peng Zhang; Li Zhang; Marvin J Slepian; Yuefan Deng; Danny Bluestein
Journal:  J Biomech       Date:  2016-11-11       Impact factor: 2.712

8.  A comprehensive study on different modelling approaches to predict platelet deposition rates in a perfusion chamber.

Authors:  Jordi Pallarès; Oriol Senan; Roger Guimerà; Anton Vernet; Antoni Aguilar-Mogas; Gemma Vilahur; Lina Badimon; Marta Sales-Pardo; Salvatore Cito
Journal:  Sci Rep       Date:  2015-09-22       Impact factor: 4.379

9.  Scalability Test of Multiscale Fluid-Platelet Model for Three Top Supercomputers.

Authors:  Peng Zhang; Na Zhang; Chao Gao; Li Zhang; Yuxiang Gao; Yuefan Deng; Danny Bluestein
Journal:  Comput Phys Commun       Date:  2016-04-08       Impact factor: 4.390

10.  First Implantation of Silicon Nanopore Membrane Hemofilters.

Authors:  Clark Kensinger; Seth Karp; Rishi Kant; Benjamin W Chui; Kenneth Goldman; Torin Yeager; Edward R Gould; Amanda Buck; David C Laneve; Joseph J Groszek; Shuvo Roy; William H Fissell
Journal:  ASAIO J       Date:  2016 Jul-Aug       Impact factor: 2.872

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