Literature DB >> 26156466

Self-consistent description of electrokinetic phenomena in particle-based simulations.

Juan P Hernández-Ortiz1, Juan J de Pablo2.   

Abstract

A new computational method is presented for study suspensions of charged particles undergoing fluctuating hydrodynamic and electrostatic interactions. The proposed model is appropriate for polymers, proteins, and porous particles embedded in a continuum electrolyte. A self-consistent Langevin description of the particles is adopted in which hydrodynamic and electrostatic interactions are included through a Green's function formalism. An Ewald-like split is adopted in order to satisfy arbitrary boundary conditions for the Stokeslet and Poisson Green functions, thereby providing a formalism that is applicable to any geometry and that can be extended to deformable objects. The convection-diffusion equation for the continuum ions is solved simultaneously considering Nernst-Planck diffusion. The method can be applied to systems at equilibrium and far from equilibrium. Its applicability is demonstrated in the context of electrokinetic motion, where it is shown that the ionic clouds associated with individual particles can be severely altered by the flow and concentration, leading to intriguing cooperative effects.

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Year:  2015        PMID: 26156466      PMCID: PMC4491022          DOI: 10.1063/1.4923342

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  35 in total

1.  Electrostatic control of the membrane targeting of C2 domains.

Authors:  Diana Murray; Barry Honig
Journal:  Mol Cell       Date:  2002-01       Impact factor: 17.970

2.  Electrostatic contributions to protein-protein interactions: fast energetic filters for docking and their physical basis.

Authors:  R Norel; F Sheinerman; D Petrey; B Honig
Journal:  Protein Sci       Date:  2001-11       Impact factor: 6.725

3.  DNA dynamics in a microchannel.

Authors:  Richard M Jendrejack; Eileen T Dimalanta; David C Schwartz; Michael D Graham; Juan J de Pablo
Journal:  Phys Rev Lett       Date:  2003-07-15       Impact factor: 9.161

4.  Ion permeation and selectivity of OmpF porin: a theoretical study based on molecular dynamics, Brownian dynamics, and continuum electrodiffusion theory.

Authors:  Wonpil Im; Benoît Roux
Journal:  J Mol Biol       Date:  2002-09-27       Impact factor: 5.469

5.  Shear-induced migration in flowing polymer solutions: simulation of long-chain DNA in microchannels [corrected].

Authors:  Richard M Jendrejack; David C Schwartz; Juan J de Pablo; Michael D Graham
Journal:  J Chem Phys       Date:  2004-02-01       Impact factor: 3.488

6.  Mesoscopic simulation of the crossing dynamics at an entanglement point of surfactant threadlike micelles.

Authors:  Satoru Yamamoto; Shi-aki Hyodo
Journal:  J Chem Phys       Date:  2005-05-22       Impact factor: 3.488

7.  Transport and collective dynamics in suspensions of confined swimming particles.

Authors:  Juan P Hernandez-Ortiz; Christopher G Stoltz; Michael D Graham
Journal:  Phys Rev Lett       Date:  2005-11-10       Impact factor: 9.161

8.  The membrane potential and its representation by a constant electric field in computer simulations.

Authors:  Benoît Roux
Journal:  Biophys J       Date:  2008-07-18       Impact factor: 4.033

9.  Hydrodynamic effects on the translocation rate of a polymer through a pore.

Authors:  Juan P Hernández-Ortiz; Manan Chopra; Stephanie Geier; Juan J de Pablo
Journal:  J Chem Phys       Date:  2009-07-28       Impact factor: 3.488

10.  Donnan potential and surface potential of a spherical soft particle in an electrolyte solution.

Authors:  Hiroyuki Ohshima
Journal:  J Colloid Interface Sci       Date:  2008-03-18       Impact factor: 8.128

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  1 in total

1.  Effects of Polymer Length and Salt Concentration on the Transport of ssDNA in Nanofluidic Channels.

Authors:  Weixin Qian; Kentaro Doi; Satoyuki Kawano
Journal:  Biophys J       Date:  2017-03-14       Impact factor: 4.033

  1 in total

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