Literature DB >> 20297780

P450cam visits an open conformation in the absence of substrate.

Young-Tae Lee1, Richard F Wilson, Igor Rupniewski, David B Goodin.   

Abstract

P450cam from Pseudomonas putida is the best characterized member of the vast family of cytochrome P450s, and it has long been believed to have a more rigid and closed active site relative to other P450s. Here we report X-ray structures of P450cam crystallized in the absence of substrate and at high and low [K(+)]. The camphor-free structures are observed in a distinct open conformation characterized by a water-filled channel created by the retraction of the F and G helices, disorder of the B' helix, and loss of the K(+) binding site. Crystallization in the presence of K(+) alone does not alter the open conformation, while crystallization with camphor alone is sufficient for closure of the channel. Soaking crystals of the open conformation in excess camphor does not promote camphor binding or closure, suggesting resistance to conformational change by the crystal lattice. This open conformation is remarkably similar to that seen upon binding large tethered substrates, showing that it is not the result of a perturbation by the ligand. Redissolved crystals of the open conformation are observed as a mixture of P420 and P450 forms, which is converted to the P450 form upon addition of camphor and K(+). These data reveal that P450cam can dynamically visit an open conformation that allows access to the deeply buried active site without being induced by substrate or ligand.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20297780      PMCID: PMC2860182          DOI: 10.1021/bi100183g

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  52 in total

1.  SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model.

Authors:  A A Vaguine; J Richelle; S J Wodak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

2.  Investigating the structural plasticity of a cytochrome P450: three-dimensional structures of P450 EryK and binding to its physiological substrate.

Authors:  Carmelinda Savino; Linda C Montemiglio; Giuliano Sciara; Adriana E Miele; Steven G Kendrew; Per Jemth; Stefano Gianni; Beatrice Vallone
Journal:  J Biol Chem       Date:  2009-07-22       Impact factor: 5.157

3.  Dynamics of protein-bound water in the heme domain of P450BM3 studied by high-pressure spectroscopy: comparison with P450cam and P450 2B4.

Authors:  D R Davydov; G Hui Bon Hoa; J A Peterson
Journal:  Biochemistry       Date:  1999-01-12       Impact factor: 3.162

4.  Crystallographic study on the dioxygen complex of wild-type and mutant cytochrome P450cam. Implications for the dioxygen activation mechanism.

Authors:  Shingo Nagano; Thomas L Poulos
Journal:  J Biol Chem       Date:  2005-06-30       Impact factor: 5.157

5.  High-resolution crystal structure of cytochrome P450cam.

Authors:  T L Poulos; B C Finzel; A J Howard
Journal:  J Mol Biol       Date:  1987-06-05       Impact factor: 5.469

6.  The formation of cytochrome P-450 from cytochrome P-420 is promoted by spermine.

Authors:  G Hui Bon Hoa; C Di Primo; M Geze; P Douzou; J A Kornblatt; S G Sligar
Journal:  Biochemistry       Date:  1990-07-24       Impact factor: 3.162

7.  Specific effects of potassium ion binding on wild-type and L358P cytochrome P450cam.

Authors:  Bo OuYang; Susan Sondej Pochapsky; Gina M Pagani; Thomas C Pochapsky
Journal:  Biochemistry       Date:  2006-12-05       Impact factor: 3.162

8.  The cytochrome p450 homepage.

Authors:  David R Nelson
Journal:  Hum Genomics       Date:  2009-10       Impact factor: 4.639

9.  The pressure dependence of the spin equilibrium in camphor-bound ferric cytochrome P-450.

Authors:  G Hui Bon Hoa; M C Marden
Journal:  Eur J Biochem       Date:  1982-05-17

10.  Substrate binding induces structural changes in cytochrome P450cam.

Authors:  Keisuke Sakurai; Hideo Shimada; Takashi Hayashi; Tomitake Tsukihara
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-01-31
View more
  53 in total

1.  Structural analysis of mammalian cytochrome P450 2B4 covalently bound to the mechanism-based inactivator tert-butylphenylacetylene: insight into partial enzymatic activity.

Authors:  Sean C Gay; Haoming Zhang; P Ross Wilderman; Arthur G Roberts; Tong Liu; Sheng Li; Hsia-Lien Lin; Qinghai Zhang; Virgil L Woods; C David Stout; Paul F Hollenberg; James R Halpert
Journal:  Biochemistry       Date:  2011-05-13       Impact factor: 3.162

2.  Three clusters of conformational states in p450cam reveal a multistep pathway for closing of the substrate access channel.

Authors:  Young-Tae Lee; Edith C Glazer; Richard F Wilson; C David Stout; David B Goodin
Journal:  Biochemistry       Date:  2011-01-11       Impact factor: 3.162

3.  Crystal structures of substrate-free and nitrosyl cytochrome P450cin: implications for O(2) activation.

Authors:  Yarrow Madrona; Sarvind Tripathi; Huiying Li; Thomas L Poulos
Journal:  Biochemistry       Date:  2012-08-07       Impact factor: 3.162

4.  Unexpected Differences between Two Closely Related Bacterial P450 Camphor Monooxygenases.

Authors:  Vidhi C Murarka; Dipanwita Batabyal; Jose A Amaya; Irina F Sevrioukova; Thomas L Poulos
Journal:  Biochemistry       Date:  2020-07-15       Impact factor: 3.162

5.  The dynamics of camphor in the cytochrome P450 CYP101D2.

Authors:  Shabana Vohra; Maria Musgaard; Stephen G Bell; Luet-Lok Wong; Weihong Zhou; Philip C Biggin
Journal:  Protein Sci       Date:  2013-08-12       Impact factor: 6.725

6.  Zaccai neutron resilience and site-specific hydration dynamics in a globular protein.

Authors:  Yinglong Miao; Liang Hong; Zheng Yi; Jeremy C Smith
Journal:  Eur Phys J E Soft Matter       Date:  2013-07-16       Impact factor: 1.890

7.  Delicate conformational balance of the redox enzyme cytochrome P450cam.

Authors:  Simon P Skinner; Wei-Min Liu; Yoshitaka Hiruma; Monika Timmer; Anneloes Blok; Mathias A S Hass; Marcellus Ubbink
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-30       Impact factor: 11.205

8.  Structural insights into the mechanism of the drastic changes in enzymatic activity of the cytochrome P450 vitamin D3 hydroxylase (CYP107BR1) caused by a mutation distant from the active site.

Authors:  Yoshiaki Yasutake; Tomoshi Kameda; Tomohiro Tamura
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2017-04-26       Impact factor: 1.056

9.  Coupled flexibility change in cytochrome P450cam substrate binding determined by neutron scattering, NMR, and molecular dynamics simulation.

Authors:  Yinglong Miao; Zheng Yi; Carey Cantrell; Dennis C Glass; Jerome Baudry; Nitin Jain; Jeremy C Smith
Journal:  Biophys J       Date:  2012-11-20       Impact factor: 4.033

10.  Double electron-electron resonance shows cytochrome P450cam undergoes a conformational change in solution upon binding substrate.

Authors:  Stefan Stoll; Young-Tae Lee; Mo Zhang; Richard F Wilson; R David Britt; David B Goodin
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-23       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.