Literature DB >> 20224578

The ribosome-bound initiation factor 2 recruits initiator tRNA to the 30S initiation complex.

Pohl Milon1, Marcello Carotti, Andrey L Konevega, Wolfgang Wintermeyer, Marina V Rodnina, Claudio O Gualerzi.   

Abstract

Bacterial translation initiation factor 2 (IF2) is a GTPase that promotes the binding of the initiator fMet-tRNA(fMet) to the 30S ribosomal subunit. It is often assumed that IF2 delivers fMet-tRNA(fMet) to the ribosome in a ternary complex, IF2.GTP.fMet-tRNA(fMet). By using rapid kinetic techniques, we show here that binding of IF2.GTP to the 30S ribosomal subunit precedes and is independent of fMet-tRNA(fMet) binding. The ternary complex formed in solution by IF2.GTP and fMet-tRNA is unstable and dissociates before IF2.GTP and, subsequently, fMet-tRNA(fMet) bind to the 30S subunit. Ribosome-bound IF2 might accelerate the recruitment of fMet-tRNA(fMet) to the 30S initiation complex by providing anchoring interactions or inducing a favourable ribosome conformation. The mechanism of action of IF2 seems to be different from that of tRNA carriers such as EF-Tu, SelB and eukaryotic initiation factor 2 (eIF2), instead resembling that of eIF5B, the eukaryotic subunit association factor.

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Year:  2010        PMID: 20224578      PMCID: PMC2854590          DOI: 10.1038/embor.2010.12

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  19 in total

1.  Light-scattering studies showing the effect of initiation factors on the reversible dissociation of Escherichia coli ribosomes.

Authors:  M Grunberg-Manago; P Dessen; D Pantaloni; T Godefroy-Colburn; A D Wolfe; J Dondon
Journal:  J Mol Biol       Date:  1975-05-25       Impact factor: 5.469

2.  GTP-dependent recognition of the methionine moiety on initiator tRNA by translation factor eIF2.

Authors:  Lee D Kapp; Jon R Lorsch
Journal:  J Mol Biol       Date:  2004-01-23       Impact factor: 5.469

Review 3.  Initiation factors in the early events of mRNA translation in bacteria.

Authors:  C O Gualerzi; L Brandi; E Caserta; C Garofalo; M Lammi; A La Teana; D Petrelli; R Spurio; J Tomsic; C L Pon
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2001

4.  Structure of the 30S translation initiation complex.

Authors:  Angelita Simonetti; Stefano Marzi; Alexander G Myasnikov; Attilio Fabbretti; Marat Yusupov; Claudio O Gualerzi; Bruno P Klaholz
Journal:  Nature       Date:  2008-08-31       Impact factor: 49.962

5.  Thermodynamic and kinetic framework of selenocysteyl-tRNASec recognition by elongation factor SelB.

Authors:  Alena Paleskava; Andrey L Konevega; Marina V Rodnina
Journal:  J Biol Chem       Date:  2009-11-23       Impact factor: 5.157

6.  Mechanism of translational initiation in prokaryotes. Evidence for a direct effect of IF2 on the activity of the 30 S ribosomal subunit.

Authors:  M A Canonaco; R A Calogero; C O Gualerzi
Journal:  FEBS Lett       Date:  1986-10-27       Impact factor: 4.124

7.  GTP consumption of elongation factor Tu during translation of heteropolymeric mRNAs.

Authors:  M V Rodnina; W Wintermeyer
Journal:  Proc Natl Acad Sci U S A       Date:  1995-03-14       Impact factor: 11.205

8.  Kinetic analysis of late steps of eukaryotic translation initiation.

Authors:  Michael G Acker; Byung-Sik Shin; Jagpreet S Nanda; Adesh K Saini; Thomas E Dever; Jon R Lorsch
Journal:  J Mol Biol       Date:  2008-10-19       Impact factor: 5.469

9.  Effect of Escherichia coli initiation factors on the kinetics of N-Acphe-tRNAPhe binding to 30S ribosomal subunits. A fluorescence stopped-flow study.

Authors:  W Wintermeyer; C Gualerzi
Journal:  Biochemistry       Date:  1983-02-01       Impact factor: 3.162

10.  Uncoupling of initiation factor eIF5B/IF2 GTPase and translational activities by mutations that lower ribosome affinity.

Authors:  Byung-Sik Shin; David Maag; Antonina Roll-Mecak; M Shamsul Arefin; Stephen K Burley; Jon R Lorsch; Thomas E Dever
Journal:  Cell       Date:  2002-12-27       Impact factor: 41.582

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  42 in total

1.  Structural dynamics of bacterial translation initiation factor IF2.

Authors:  Hans Wienk; Evgeny Tishchenko; Riccardo Belardinelli; Simona Tomaselli; Ramachandra Dongre; Roberto Spurio; Gert E Folkers; Claudio O Gualerzi; Rolf Boelens
Journal:  J Biol Chem       Date:  2012-02-03       Impact factor: 5.157

2.  Role of helix 44 of 16S rRNA in the fidelity of translation initiation.

Authors:  Daoming Qin; Qi Liu; Aishwarya Devaraj; Kurt Fredrick
Journal:  RNA       Date:  2012-01-25       Impact factor: 4.942

3.  Real-time assembly landscape of bacterial 30S translation initiation complex.

Authors:  Pohl Milón; Cristina Maracci; Liudmila Filonava; Claudio O Gualerzi; Marina V Rodnina
Journal:  Nat Struct Mol Biol       Date:  2012-05-06       Impact factor: 15.369

4.  Initiation factor 2 crystal structure reveals a different domain organization from eukaryotic initiation factor 5B and mechanism among translational GTPases.

Authors:  Daniel Eiler; Jinzhong Lin; Angelita Simonetti; Bruno P Klaholz; Thomas A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-12       Impact factor: 11.205

5.  AtaT blocks translation initiation by N-acetylation of the initiator tRNAfMet.

Authors:  Dukas Jurėnas; Sneha Chatterjee; Albert Konijnenberg; Frank Sobott; Louis Droogmans; Abel Garcia-Pino; Laurence Van Melderen
Journal:  Nat Chem Biol       Date:  2017-04-03       Impact factor: 15.040

Review 6.  Taking a Step Back from Back-Translocation: an Integrative View of LepA/EF4's Cellular Function.

Authors:  Jalyce L E Heller; Rajashekhar Kamalampeta; Hans-Joachim Wieden
Journal:  Mol Cell Biol       Date:  2017-05-31       Impact factor: 4.272

7.  Reaction dynamics analysis of a reconstituted Escherichia coli protein translation system by computational modeling.

Authors:  Tomoaki Matsuura; Naoki Tanimura; Kazufumi Hosoda; Tetsuya Yomo; Yoshihiro Shimizu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-06       Impact factor: 11.205

Review 8.  Bacterial replication, transcription and translation: mechanistic insights from single-molecule biochemical studies.

Authors:  Andrew Robinson; Antoine M van Oijen
Journal:  Nat Rev Microbiol       Date:  2013-04-03       Impact factor: 60.633

Review 9.  Hijacking Translation Initiation for Synthetic Biology.

Authors:  Jeffery M Tharp; Natalie Krahn; Umesh Varshney; Dieter Söll
Journal:  Chembiochem       Date:  2020-03-02       Impact factor: 3.164

10.  Inhibition of translation initiation complex formation by GE81112 unravels a 16S rRNA structural switch involved in P-site decoding.

Authors:  Attilio Fabbretti; Andreas Schedlbauer; Letizia Brandi; Tatsuya Kaminishi; Anna Maria Giuliodori; Raffaella Garofalo; Borja Ochoa-Lizarralde; Chie Takemoto; Shigeyuki Yokoyama; Sean R Connell; Claudio O Gualerzi; Paola Fucini
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-06       Impact factor: 11.205

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