Literature DB >> 20207142

Oxime esters as selective, covalent inhibitors of the serine hydrolase retinoblastoma-binding protein 9 (RBBP9).

Daniel A Bachovchin1, Monique R Wolfe, Kim Masuda, Steven J Brown, Timothy P Spicer, Virneliz Fernandez-Vega, Peter Chase, Peter S Hodder, Hugh Rosen, Benjamin F Cravatt.   

Abstract

We recently described a fluorescence polarization platform for competitive activity-based protein profiling (fluopol-ABPP) that enables high-throughput inhibitor screening for enzymes with poorly characterized biochemical activity. Here, we report the discovery of a class of oxime ester inhibitors for the unannotated serine hydrolase RBBP9 from a full-deck (200,000+ compound) fluopol-ABPP screen conducted in collaboration with the Molecular Libraries Screening Center Network (MLSCN). We show that these compounds covalently inhibit RBBP9 by modifying enzyme's active site serine nucleophile and, based on competitive ABPP in cell and tissue proteomes, are selective for RBBP9 relative to other mammalian serine hydrolases. 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20207142      PMCID: PMC2843764          DOI: 10.1016/j.bmcl.2010.02.011

Source DB:  PubMed          Journal:  Bioorg Med Chem Lett        ISSN: 0960-894X            Impact factor:   2.823


  21 in total

1.  Activity-based protein profiling: the serine hydrolases.

Authors:  Y Liu; M P Patricelli; B F Cravatt
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

2.  Chemical approaches for functionally probing the proteome.

Authors:  Doron Greenbaum; Amos Baruch; Linda Hayrapetian; Zsuzsanna Darula; Alma Burlingame; Katlin F Medzihradszky; Matthew Bogyo
Journal:  Mol Cell Proteomics       Date:  2002-01       Impact factor: 5.911

3.  Structural basis for inhibition of protein synthesis by emetine and cycloheximide based on an analogy between ipecac alkaloids and glutarimide antibiotics.

Authors:  A P Grollman
Journal:  Proc Natl Acad Sci U S A       Date:  1966-12       Impact factor: 11.205

Review 4.  Mechanism-based profiling of enzyme families.

Authors:  Michael J Evans; Benjamin F Cravatt
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

5.  Scaffold composition and biological relevance of screening libraries.

Authors:  Anang A Shelat; R Kiplin Guy
Journal:  Nat Chem Biol       Date:  2007-08       Impact factor: 15.040

Review 6.  Activity-based protein profiling: from enzyme chemistry to proteomic chemistry.

Authors:  Benjamin F Cravatt; Aaron T Wright; John W Kozarich
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

7.  Potent inhibitors of lipoprotein-associated phospholipase A(2): benzaldehyde O-heterocycle-4-carbonyloxime.

Authors:  Hyung Jae Jeong; Yong-Dae Park; Ho-Yong Park; Il Yun Jeong; Tae-Sook Jeong; Woo Song Lee
Journal:  Bioorg Med Chem Lett       Date:  2006-08-21       Impact factor: 2.823

8.  Substrate activity screening: a fragment-based method for the rapid identification of nonpeptidic protease inhibitors.

Authors:  Warren J L Wood; Andrew W Patterson; Hiroyuki Tsuruoka; Rishi K Jain; Jonathan A Ellman
Journal:  J Am Chem Soc       Date:  2005-11-09       Impact factor: 15.419

9.  The lipase inhibitor tetrahydrolipstatin binds covalently to the putative active site serine of pancreatic lipase.

Authors:  P Hadváry; W Sidler; W Meister; W Vetter; H Wolfer
Journal:  J Biol Chem       Date:  1991-02-05       Impact factor: 5.157

10.  Selective blockade of 2-arachidonoylglycerol hydrolysis produces cannabinoid behavioral effects.

Authors:  Jonathan Z Long; Weiwei Li; Lamont Booker; James J Burston; Steven G Kinsey; Joel E Schlosburg; Franciso J Pavón; Antonia M Serrano; Dana E Selley; Loren H Parsons; Aron H Lichtman; Benjamin F Cravatt
Journal:  Nat Chem Biol       Date:  2008-11-23       Impact factor: 15.040

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  11 in total

Review 1.  Human retinoblastoma binding protein 9, a serine hydrolase implicated in pancreatic cancers.

Authors:  Sergey M Vorobiev; Yuanpeng Janet Huang; Jayaraman Seetharaman; Rong Xiao; Thomas B Acton; Gaetano T Montelione; Liang Tong
Journal:  Protein Pept Lett       Date:  2012-02       Impact factor: 1.890

Review 2.  The pharmacological landscape and therapeutic potential of serine hydrolases.

Authors:  Daniel A Bachovchin; Benjamin F Cravatt
Journal:  Nat Rev Drug Discov       Date:  2012-01-03       Impact factor: 84.694

Review 3.  The metabolic serine hydrolases and their functions in mammalian physiology and disease.

Authors:  Jonathan Z Long; Benjamin F Cravatt
Journal:  Chem Rev       Date:  2011-06-23       Impact factor: 60.622

4.  Fluorescence polarization assays in high-throughput screening and drug discovery: a review.

Authors:  Matthew D Hall; Adam Yasgar; Tyler Peryea; John C Braisted; Ajit Jadhav; Anton Simeonov; Nathan P Coussens
Journal:  Methods Appl Fluoresc       Date:  2016-04-28       Impact factor: 3.009

5.  Novel inhibitors for PRMT1 discovered by high-throughput screening using activity-based fluorescence polarization.

Authors:  Myles B C Dillon; Daniel A Bachovchin; Steven J Brown; M G Finn; Hugh Rosen; Benjamin F Cravatt; Kerri A Mowen
Journal:  ACS Chem Biol       Date:  2012-04-20       Impact factor: 5.100

Review 6.  Activity-based protein profiling for biochemical pathway discovery in cancer.

Authors:  Daniel K Nomura; Melissa M Dix; Benjamin F Cravatt
Journal:  Nat Rev Cancer       Date:  2010-08-12       Impact factor: 60.716

7.  A substrate-free activity-based protein profiling screen for the discovery of selective PREPL inhibitors.

Authors:  Anna Mari Lone; Daniel A Bachovchin; David B Westwood; Anna E Speers; Timothy P Spicer; Virneliz Fernandez-Vega; Peter Chase; Peter S Hodder; Hugh Rosen; Benjamin F Cravatt; Alan Saghatelian
Journal:  J Am Chem Soc       Date:  2011-07-12       Impact factor: 15.419

8.  A new class of rhomboid protease inhibitors discovered by activity-based fluorescence polarization.

Authors:  Eliane V Wolf; Annett Zeißler; Oliver Vosyka; Evelyn Zeiler; Stephan Sieber; Steven H L Verhelst
Journal:  PLoS One       Date:  2013-08-22       Impact factor: 3.240

9.  A high-throughput, multiplexed assay for superfamily-wide profiling of enzyme activity.

Authors:  Daniel A Bachovchin; Luke W Koblan; Wengen Wu; Yuxin Liu; Youhua Li; Peng Zhao; Iwona Woznica; Ying Shu; Jack H Lai; Sarah E Poplawski; Christopher P Kiritsy; Sarah E Healey; Matthew DiMare; David G Sanford; Robert S Munford; William W Bachovchin; Todd R Golub
Journal:  Nat Chem Biol       Date:  2014-07-06       Impact factor: 15.040

Review 10.  Advanced Activity-Based Protein Profiling Application Strategies for Drug Development.

Authors:  Shan Wang; Yu Tian; Min Wang; Min Wang; Gui-Bo Sun; Xiao-Bo Sun
Journal:  Front Pharmacol       Date:  2018-04-09       Impact factor: 5.810

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