Literature DB >> 25489752

Genomic sequences of six botulinum neurotoxin-producing strains representing three clostridial species illustrate the mobility and diversity of botulinum neurotoxin genes.

Theresa J Smith1, Karen K Hill2, Gary Xie2, Brian T Foley3, Charles H D Williamson4, Jeffrey T Foster4, Shannon L Johnson2, Olga Chertkov2, Hazuki Teshima2, Henry S Gibbons5, Lauren A Johnsky5, Mark A Karavis5, Leonard A Smith6.   

Abstract

The whole genomes for six botulinum neurotoxin-producing clostridial strains were sequenced to provide references for under-represented toxin types, bivalent strains or unusual toxin complexes associated with a bont gene. The strains include three Clostridium botulinum Group I strains (CDC 297, CDC 1436, and Prevot 594), a Group II C. botulinum strain (Eklund 202F), a Group IV Clostridium argentinense strain (CDC 2741), and a Group V Clostridium baratii strain (Sullivan). Comparisons of the Group I genomic sequences revealed close relationships and conservation of toxin gene locations with previously published Group I C. botulinum genomes. The bont/F6 gene of strain Eklund 202F was determined to be a chimeric toxin gene composed of bont/F1 and bont/F2. The serotype G strain CDC 2741 remained unfinished in 20 contigs with the bont/G located within a 1.15Mb contig, indicating a possible chromosomal location for this toxin gene. Within the genome of C. baratii Sullivan strain, direct repeats of IS1182 insertion sequence (IS) elements were identified flanking the bont/F7 toxin complex that may be the mechanism of bont insertion into C. baratii. Highlights of the six strains are described and release of their genomic sequences will allow further study of unusual neurotoxin-producing clostridial strains. Published by Elsevier B.V.

Entities:  

Keywords:  Botulinum neurotoxin; Clostridium argentinense; Clostridium baratii; Clostridium botulinum

Mesh:

Substances:

Year:  2014        PMID: 25489752      PMCID: PMC5459376          DOI: 10.1016/j.meegid.2014.12.002

Source DB:  PubMed          Journal:  Infect Genet Evol        ISSN: 1567-1348            Impact factor:   3.342


  56 in total

1.  A likelihood approach to estimating phylogeny from discrete morphological character data.

Authors:  P O Lewis
Journal:  Syst Biol       Date:  2001 Nov-Dec       Impact factor: 15.683

2.  Sequence variation within botulinum neurotoxin serotypes impacts antibody binding and neutralization.

Authors:  T J Smith; J Lou; I N Geren; C M Forsyth; R Tsai; S L Laporte; W H Tepp; M Bradshaw; E A Johnson; L A Smith; J D Marks
Journal:  Infect Immun       Date:  2005-09       Impact factor: 3.441

3.  Plasmid-borne type E neurotoxin gene clusters in Clostridium botulinum strains.

Authors:  Zhen Zhang; Hannamari Hintsa; Ying Chen; Hannu Korkeala; Miia Lindström
Journal:  Appl Environ Microbiol       Date:  2013-04-05       Impact factor: 4.792

4.  Prokka: rapid prokaryotic genome annotation.

Authors:  Torsten Seemann
Journal:  Bioinformatics       Date:  2014-03-18       Impact factor: 6.937

5.  The genes for the Clostridium botulinum type G toxin complex are on a plasmid.

Authors:  Y Zhou; H Sugiyama; H Nakano; E A Johnson
Journal:  Infect Immun       Date:  1995-05       Impact factor: 3.441

Review 6.  Assembly and function of the botulinum neurotoxin progenitor complex.

Authors:  Shenyan Gu; Rongsheng Jin
Journal:  Curr Top Microbiol Immunol       Date:  2013       Impact factor: 4.291

7.  Genetic diversity within Clostridium botulinum serotypes, botulinum neurotoxin gene clusters and toxin subtypes.

Authors:  Karen K Hill; Theresa J Smith
Journal:  Curr Top Microbiol Immunol       Date:  2013       Impact factor: 4.291

8.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

Review 9.  Phylogeny and taxonomy of the food-borne pathogen Clostridium botulinum and its neurotoxins.

Authors:  M D Collins; A K East
Journal:  J Appl Microbiol       Date:  1998-01       Impact factor: 3.772

10.  Draft Genome Sequence of Clostridium botulinum Type B Strain Osaka05, Isolated from an Infant Patient with Botulism in Japan.

Authors:  Yoshihiko Sakaguchi; Koji Hosomi; Jumpei Uchiyama; Yoshitoshi Ogura; Kaoru Umeda; Masakiyo Sakaguchi; Tomoko Kohda; Masafumi Mukamoto; Naoaki Misawa; Shigenobu Matsuzaki; Tetsuya Hayashi; Shunji Kozaki
Journal:  Genome Announc       Date:  2014-01-23
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  27 in total

1.  Implications of Genome-Based Discrimination between Clostridium botulinum Group I and Clostridium sporogenes Strains for Bacterial Taxonomy.

Authors:  Michael R Weigand; Angela Pena-Gonzalez; Timothy B Shirey; Robin G Broeker; Maliha K Ishaq; Konstantinos T Konstantinidis; Brian H Raphael
Journal:  Appl Environ Microbiol       Date:  2015-06-05       Impact factor: 4.792

2.  Clostridium botulinum Group II Isolate Phylogenomic Profiling Using Whole-Genome Sequence Data.

Authors:  K A Weedmark; P Mabon; K L Hayden; D Lambert; G Van Domselaar; J W Austin; C R Corbett
Journal:  Appl Environ Microbiol       Date:  2015-06-26       Impact factor: 4.792

3.  Genomic Epidemiology of Clostridium botulinum Isolates from Temporally Related Cases of Infant Botulism in New South Wales, Australia.

Authors:  Nadine McCallum; Timothy J Gray; Qinning Wang; Jimmy Ng; Leanne Hicks; Trang Nguyen; Marion Yuen; Grant A Hill-Cawthorne; Vitali Sintchenko
Journal:  J Clin Microbiol       Date:  2015-06-24       Impact factor: 5.948

4.  Draft Genome Sequences of Two Clostridium botulinum Group II Strains Carrying Phage-Like Plasmids.

Authors:  Brigitte Cadieux; Opeyemi U Lawal; Jean-Guillaume Emond-Rheault; Julie Jeukens; Luca Freschi; Irena Kukavica-Ibrulj; Roger C Levesque; John W Austin; Lawrence Goodridge
Journal:  Microbiol Resour Announc       Date:  2022-05-18

5.  Draft Genome Sequence of Clostridium botulinum Strain 277-00 Type B2.

Authors:  Christelle Mazuet; Christiane Bouchier; Michel-Robert Popoff
Journal:  Genome Announc       Date:  2015-04-02

Review 6.  New Elements To Consider When Modeling the Hazards Associated with Botulinum Neurotoxin in Food.

Authors:  Adaoha E C Ihekwaba; Ivan Mura; Pradeep K Malakar; John Walshaw; Michael W Peck; G C Barker
Journal:  J Bacteriol       Date:  2015-09-08       Impact factor: 3.490

7.  Evolution of Chromosomal Clostridium botulinum Type E Neurotoxin Gene Clusters: Evidence Provided by Their Rare Plasmid-Borne Counterparts.

Authors:  Andrew T Carter; John W Austin; Kelly A Weedmark; Michael W Peck
Journal:  Genome Biol Evol       Date:  2016-03-02       Impact factor: 3.416

8.  Detection of the HA-33 protein in botulinum neurotoxin type G complex by mass spectrometry.

Authors:  Suzanne R Kalb; Jakub Baudys; John R Barr
Journal:  BMC Microbiol       Date:  2015-10-23       Impact factor: 3.605

9.  Diversity of Group I and II Clostridium botulinum Strains from France Including Recently Identified Subtypes.

Authors:  Christelle Mazuet; Christine Legeay; Jean Sautereau; Laurence Ma; Christiane Bouchier; Philippe Bouvet; Michel R Popoff
Journal:  Genome Biol Evol       Date:  2016-06-13       Impact factor: 3.416

10.  Characterization of the spore surface and exosporium proteins of Clostridium sporogenes; implications for Clostridium botulinum group I strains.

Authors:  Thamarai K Janganan; Nic Mullin; Svetomir B Tzokov; Sandra Stringer; Robert P Fagan; Jamie K Hobbs; Anne Moir; Per A Bullough
Journal:  Food Microbiol       Date:  2016-06-06       Impact factor: 5.516

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