Literature DB >> 23095472

Clinical Bioinformatics: challenges and opportunities.

Riccardo Bellazzi1, Marco Masseroli, Shawn Murphy, Amnon Shabo, Paolo Romano.   

Abstract

BACKGROUND: Network Tools and Applications in Biology (NETTAB) Workshops are a series of meetings focused on the most promising and innovative ICT tools and to their usefulness in Bioinformatics. The NETTAB 2011 workshop, held in Pavia, Italy, in October 2011 was aimed at presenting some of the most relevant methods, tools and infrastructures that are nowadays available for Clinical Bioinformatics (CBI), the research field that deals with clinical applications of bioinformatics.
METHODS: In this editorial, the viewpoints and opinions of three world CBI leaders, who have been invited to participate in a panel discussion of the NETTAB workshop on the next challenges and future opportunities of this field, are reported. These include the development of data warehouses and ICT infrastructures for data sharing, the definition of standards for sharing phenotypic data and the implementation of novel tools to implement efficient search computing solutions.
RESULTS: Some of the most important design features of a CBI-ICT infrastructure are presented, including data warehousing, modularity and flexibility, open-source development, semantic interoperability, integrated search and retrieval of -omics information.
CONCLUSIONS: Clinical Bioinformatics goals are ambitious. Many factors, including the availability of high-throughput "-omics" technologies and equipment, the widespread availability of clinical data warehouses and the noteworthy increase in data storage and computational power of the most recent ICT systems, justify research and efforts in this domain, which promises to be a crucial leveraging factor for biomedical research.

Entities:  

Mesh:

Year:  2012        PMID: 23095472      PMCID: PMC3439676          DOI: 10.1186/1471-2105-13-S14-S1

Source DB:  PubMed          Journal:  BMC Bioinformatics        ISSN: 1471-2105            Impact factor:   3.169


  6 in total

1.  HL7 Clinical Document Architecture, Release 2.

Authors:  Robert H Dolin; Liora Alschuler; Sandy Boyer; Calvin Beebe; Fred M Behlen; Paul V Biron; Amnon Shabo Shvo
Journal:  J Am Med Inform Assoc       Date:  2005-10-12       Impact factor: 4.497

2.  Translational bioinformatics: coming of age.

Authors:  Atul J Butte
Journal:  J Am Med Inform Assoc       Date:  2008-08-28       Impact factor: 4.497

3.  Bio-Search Computing: integration and global ranking of bioinformatics search results.

Authors:  Marco Masseroli; Giorgio Ghisalberti; Stefano Ceri
Journal:  J Integr Bioinform       Date:  2011-09-06

4.  Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2).

Authors:  Shawn N Murphy; Griffin Weber; Michael Mendis; Vivian Gainer; Henry C Chueh; Susanne Churchill; Isaac Kohane
Journal:  J Am Med Inform Assoc       Date:  2010 Mar-Apr       Impact factor: 4.497

5.  Clinical bioinformatics: a new emerging science.

Authors:  Xiangdong Wang; Lance Liotta
Journal:  J Clin Bioinforma       Date:  2011-01-20

6.  Translational bioinformatics: linking knowledge across biological and clinical realms.

Authors:  Indra Neil Sarkar; Atul J Butte; Yves A Lussier; Peter Tarczy-Hornoch; Lucila Ohno-Machado
Journal:  J Am Med Inform Assoc       Date:  2011-05-10       Impact factor: 4.497

  6 in total
  4 in total

1.  Phenome-wide association studies on a quantitative trait: application to TPMT enzyme activity and thiopurine therapy in pharmacogenomics.

Authors:  Antoine Neuraz; Laurent Chouchana; Georgia Malamut; Christine Le Beller; Denis Roche; Philippe Beaune; Patrice Degoulet; Anita Burgun; Marie-Anne Loriot; Paul Avillach
Journal:  PLoS Comput Biol       Date:  2013-12-26       Impact factor: 4.475

2.  Calculating semantic relatedness for biomedical use in a knowledge-poor environment.

Authors:  Maciej Rybinski; José Aldana-Montes
Journal:  BMC Bioinformatics       Date:  2014-11-27       Impact factor: 3.169

3.  Integrating translational bioinformatics into the medical curriculum.

Authors:  Benedict Yan; Kenneth H K Ban; Tin W Tan
Journal:  Int J Med Educ       Date:  2014-07-16

4.  Experiences of Transforming a Complex Nephrologic Care and Research Database into i2b2 Using the IDRT Tools.

Authors:  Christian Maier; Jan Christoph; Danilo Schmidt; Thomas Ganslandt; H U Prokosch; Stefan Kraus; Martin Sedlmayr
Journal:  J Healthc Eng       Date:  2019-01-17       Impact factor: 2.682

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.