Literature DB >> 20180025

Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue.

Ik Sang Cho1, Jung Kim, Hye Youn Seo, Do Hwan Lim, Jae Sang Hong, Young Hee Park, Dae Cheul Park, Ki-Chang Hong, Kwang Youn Whang, Young Sik Lee.   

Abstract

MicroRNAs (miRNAs) are an abundant class of small regulatory RNAs that regulate the stability and translation of cognate mRNAs. Although an increasing number of porcine miRNAs has recently been identified, the full repertoire of miRNAs in pig remains to be elucidated. To identify porcine miRNAs potentially involved in myogenesis and adipogenesis, we constructed small RNA cDNA libraries from skeletal muscle and adipose tissue and identified 89 distinct miRNAs that are conserved in pig, of which 15 were new. Expression analysis of all newly identified and selected known porcine miRNAs revealed that some miRNAs were enriched in a tissue-specific manner, whereas others were expressed ubiquitously in the porcine tissues examined. Our results expand the number of known porcine miRNAs and provide useful information for further investigating the biological functions of miRNAs associated with growth and development of skeletal muscle or adipose tissue in pig.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20180025     DOI: 10.1007/s11033-010-0005-6

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  13 in total

Review 1.  MicroRNAs: genomics, biogenesis, mechanism, and function.

Authors:  David P Bartel
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

2.  Phylogenetic shadowing and computational identification of human microRNA genes.

Authors:  Eugene Berezikov; Victor Guryev; José van de Belt; Erno Wienholds; Ronald H A Plasterk; Edwin Cuppen
Journal:  Cell       Date:  2005-01-14       Impact factor: 41.582

3.  New porcine microRNA genes found by homology search.

Authors:  Hee-Jeong Kim; Xiang-Shun Cui; Eun-Jung Kim; Wun-Jae Kim; Nam-Hyung Kim
Journal:  Genome       Date:  2006-10       Impact factor: 2.166

Review 4.  microRNA functions.

Authors:  Natascha Bushati; Stephen M Cohen
Journal:  Annu Rev Cell Dev Biol       Date:  2007       Impact factor: 13.827

Review 5.  Mechanisms of miRNA-mediated post-transcriptional regulation in animal cells.

Authors:  Marina Chekulaeva; Witold Filipowicz
Journal:  Curr Opin Cell Biol       Date:  2009-05-18       Impact factor: 8.382

6.  Identification and characterization of new microRNAs from pig.

Authors:  Jung Kim; Ik Sang Cho; Jae Sang Hong; Young Ki Choi; Hyunggee Kim; Young Sik Lee
Journal:  Mamm Genome       Date:  2008-06-12       Impact factor: 2.957

7.  Most mammalian mRNAs are conserved targets of microRNAs.

Authors:  Robin C Friedman; Kyle Kai-How Farh; Christopher B Burge; David P Bartel
Journal:  Genome Res       Date:  2008-10-27       Impact factor: 9.043

8.  Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing.

Authors:  Rasmus Wernersson; Mikkel H Schierup; Frank G Jørgensen; Jan Gorodkin; Frank Panitz; Hans-Henrik Staerfeldt; Ole F Christensen; Thomas Mailund; Henrik Hornshøj; Ami Klein; Jun Wang; Bin Liu; Songnian Hu; Wei Dong; Wei Li; Gane K S Wong; Jun Yu; Jian Wang; Christian Bendixen; Merete Fredholm; Søren Brunak; Huanming Yang; Lars Bolund
Journal:  BMC Genomics       Date:  2005-05-10       Impact factor: 3.969

9.  MicroRNA transcriptome profiles during swine skeletal muscle development.

Authors:  Tara G McDaneld; Timothy P L Smith; Matthew E Doumit; Jeremy R Miles; Luiz L Coutinho; Tad S Sonstegard; Lakshmi K Matukumalli; Dan J Nonneman; Ralph T Wiedmann
Journal:  BMC Genomics       Date:  2009-02-10       Impact factor: 3.969

10.  Cloning, characterization and expression analysis of porcine microRNAs.

Authors:  Alavala Matta Reddy; Yun Zheng; Guru Jagadeeswaran; Simone L Macmil; Wiley B Graham; Bruce A Roe; Udaya Desilva; Weixiong Zhang; Ramanjulu Sunkar
Journal:  BMC Genomics       Date:  2009-02-05       Impact factor: 3.969

View more
  17 in total

1.  Biological role of microRNA-103 based on expression profile and target genes analysis in pigs.

Authors:  Guoxi Li; Zongsong Wu; Xinjian Li; Xiaomin Ning; Yanjie Li; Gongshe Yang
Journal:  Mol Biol Rep       Date:  2010-12-09       Impact factor: 2.316

2.  miR-125a inhibits porcine preadipocytes differentiation by targeting ERRα.

Authors:  Hong-Lei Ji; Cheng-Chuang Song; Yue-Feng Li; Jing-Jing He; You-Lei Li; Xue-Li Zheng; Gong-She Yang
Journal:  Mol Cell Biochem       Date:  2014-06-22       Impact factor: 3.396

3.  Diminished skeletal muscle microRNA expression with aging is associated with attenuated muscle plasticity and inhibition of IGF-1 signaling.

Authors:  Donato A Rivas; Sarah J Lessard; Nicholas P Rice; Michael S Lustgarten; Kawai So; Laurie J Goodyear; Laurence D Parnell; Roger A Fielding
Journal:  FASEB J       Date:  2014-06-13       Impact factor: 5.191

4.  The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing.

Authors:  Klaudia Pawlina; Artur Gurgul; Maria Oczkowicz; Monika Bugno-Poniewierska
Journal:  J Appl Genet       Date:  2014-09-18       Impact factor: 3.240

5.  MicroRNA expression profiling of the porcine developing brain.

Authors:  Agnieszka Podolska; Bogumil Kaczkowski; Peter Kamp Busk; Rolf Søkilde; Thomas Litman; Merete Fredholm; Susanna Cirera
Journal:  PLoS One       Date:  2011-01-06       Impact factor: 3.240

6.  Xenotransplantation: Where Are We with Potential Kidney Recipients? Recent Progress and Potential Future Clinical Trials.

Authors:  Kazuhiko Yamada; Jigesh A Shah; Tatsu Tanabe; Miguel A Lanaspa; Richard J Johnson
Journal:  Curr Transplant Rep       Date:  2017-05-08

7.  miR-26b promotes granulosa cell apoptosis by targeting ATM during follicular atresia in porcine ovary.

Authors:  Fei Lin; Ran Li; Zeng Xiang Pan; Bo Zhou; De Bing Yu; Xu Guang Wang; Xue Shan Ma; Jing Han; Ming Shen; Hong Lin Liu
Journal:  PLoS One       Date:  2012-06-21       Impact factor: 3.240

8.  Discovery of porcine microRNAs in multiple tissues by a Solexa deep sequencing approach.

Authors:  Sheng-Song Xie; Xin-Yun Li; Teng Liu; Jian-Hua Cao; Qiang Zhong; Shu-Hong Zhao
Journal:  PLoS One       Date:  2011-01-25       Impact factor: 3.240

9.  Identification and profiling of microRNAs from skeletal muscle of the common carp.

Authors:  Xuechun Yan; Lei Ding; Yunchao Li; Xiaofeng Zhang; Yang Liang; Xiaowen Sun; Chun-Bo Teng
Journal:  PLoS One       Date:  2012-01-27       Impact factor: 3.240

10.  miRNA expression profile analysis in kidney of different porcine breeds.

Authors:  Oriol Timoneda; Ingrid Balcells; Jose Ignacio Núñez; Raquel Egea; Gonzalo Vera; Anna Castelló; Anna Tomàs; Armand Sánchez
Journal:  PLoS One       Date:  2013-01-25       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.